Multiple platform build/check report for BioC 3.20 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4505
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4506
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4538
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4486
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz

StartedAt: 2024-11-08 21:22:07 -0500 (Fri, 08 Nov 2024)

EndedAt: 2024-11-08 21:26:17 -0500 (Fri, 08 Nov 2024)

EllapsedTime: 249.4 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-11-08 21:26:02.851][biodb::testContext]
biodb.INFO [2024-11-08 21:26:02.852][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:02.853][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-11-08 21:26:02.853][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:02.853][biodb::testContext]
biodb.INFO [2024-11-08 21:26:02.854][biodb::testThat]
biodb.INFO [2024-11-08 21:26:02.854][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-11-08 21:26:02.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:02.855][biodb::testThat]
biodb.INFO [2024-11-08 21:26:02.891][biodb::testContext]
biodb.INFO [2024-11-08 21:26:02.892][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:02.892][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-11-08 21:26:02.892][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:02.892][biodb::testContext]
biodb.INFO [2024-11-08 21:26:02.896][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-08 21:26:02.897][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-08 21:26:02.900][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:02.900][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-08 21:26:02.900][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-08 21:26:02.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.901][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-08 21:26:02.910][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-08 21:26:02.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.911][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-08 21:26:02.911][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-08 21:26:02.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.912][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-08 21:26:02.912][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-08 21:26:02.913][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-08 21:26:02.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.913][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-08 21:26:02.914][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-08 21:26:02.914][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-08 21:26:02.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.915][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-08 21:26:02.915][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-08 21:26:02.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.916][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-08 21:26:02.916][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-08 21:26:02.917][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-08 21:26:02.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.918][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-08 21:26:02.918][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-08 21:26:02.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.919][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-08 21:26:02.919][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-08 21:26:02.919][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-08 21:26:02.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.920][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-08 21:26:02.920][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-08 21:26:02.921][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-08 21:26:02.921][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-08 21:26:02.921][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-08 21:26:02.921][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-08 21:26:02.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.922][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-08 21:26:02.923][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-08 21:26:02.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.924][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-08 21:26:02.924][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-08 21:26:02.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.925][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-08 21:26:02.925][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-08 21:26:02.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.926][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-08 21:26:02.926][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-08 21:26:02.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.927][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-08 21:26:02.927][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-08 21:26:02.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.928][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-08 21:26:02.929][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-08 21:26:02.933][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-08 21:26:02.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.935][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-08 21:26:02.935][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-08 21:26:02.935][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-08 21:26:02.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.937][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-08 21:26:02.949][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.954][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-08 21:26:02.954][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.954][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:02.954][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.955][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.955][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.955][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.955][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-08 21:26:02.956][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:02.956][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.956][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-08 21:26:02.957][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-08 21:26:02.958][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:02.958][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.958][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.958][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:02.959][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.959][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.961][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.962][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.962][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:02.962][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:02.962][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.963][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.963][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-08 21:26:02.963][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.964][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-08 21:26:02.964][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.964][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:02.964][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.965][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.965][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.965][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.965][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-08 21:26:02.966][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:02.966][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.966][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-08 21:26:02.966][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-08 21:26:02.967][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:02.968][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.968][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:02.968][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.969][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.969][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.969][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:02.970][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:02.970][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.970][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.970][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-08 21:26:02.971][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.971][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-08 21:26:02.971][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.972][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:02.972][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.972][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.972][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.973][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.973][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-08 21:26:02.973][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:02.973][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.974][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-08 21:26:02.974][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:02.974][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.974][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.975][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.975][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:02.975][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.976][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:02.976][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.976][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.977][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:02.977][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:02.977][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.977][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.978][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-08 21:26:02.978][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.979][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-08 21:26:02.979][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:02.979][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.980][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.980][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.980][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.980][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-08 21:26:02.981][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:02.981][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.981][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-08 21:26:02.981][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:02.982][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.982][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:02.982][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.982][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:02.983][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.983][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:02.983][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:02.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:02.984][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:02.984][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.984][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:02.984][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:02.985][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:02.985][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:02.987][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:02.987][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:02.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:02.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:02.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:02.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:02.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.006][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-08 21:26:03.010][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-08 21:26:03.011][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-08 21:26:03.011][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-08 21:26:03.011][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-08 21:26:03.012][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-08 21:26:03.012][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-08 21:26:03.012][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-08 21:26:03.013][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-08 21:26:03.013][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-08 21:26:03.013][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-08 21:26:03.014][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-08 21:26:03.014][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-08 21:26:03.015][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-08 21:26:03.015][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-08 21:26:03.015][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-08 21:26:03.016][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-08 21:26:03.016][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-08 21:26:03.016][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-08 21:26:03.017][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-08 21:26:03.017][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-08 21:26:03.017][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-08 21:26:03.018][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-08 21:26:03.018][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-08 21:26:03.018][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-08 21:26:03.019][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-08 21:26:03.019][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-08 21:26:03.019][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-08 21:26:03.020][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-08 21:26:03.020][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-08 21:26:03.020][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-08 21:26:03.021][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-08 21:26:03.021][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-08 21:26:03.021][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-08 21:26:03.022][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-08 21:26:03.022][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-08 21:26:03.022][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-08 21:26:03.022][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-08 21:26:03.023][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-08 21:26:03.023][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-08 21:26:03.023][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-08 21:26:03.024][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-08 21:26:03.024][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-08 21:26:03.024][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-08 21:26:03.025][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-08 21:26:03.025][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-08 21:26:03.025][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-08 21:26:03.026][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-08 21:26:03.026][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-08 21:26:03.026][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-08 21:26:03.027][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-08 21:26:03.027][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-08 21:26:03.027][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-08 21:26:03.028][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-08 21:26:03.028][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-08 21:26:03.028][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-08 21:26:03.029][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-08 21:26:03.029][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-08 21:26:03.029][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-08 21:26:03.030][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-08 21:26:03.030][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-08 21:26:03.030][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-08 21:26:03.031][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-08 21:26:03.031][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-08 21:26:03.031][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-08 21:26:03.032][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-08 21:26:03.032][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-08 21:26:03.032][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-08 21:26:03.033][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-08 21:26:03.033][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-08 21:26:03.033][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-08 21:26:03.034][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-08 21:26:03.034][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-08 21:26:03.034][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-08 21:26:03.035][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-08 21:26:03.035][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-08 21:26:03.035][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-08 21:26:03.036][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-08 21:26:03.036][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-08 21:26:03.036][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-08 21:26:03.037][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-08 21:26:03.037][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-08 21:26:03.037][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-08 21:26:03.039][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-08 21:26:03.039][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-08 21:26:03.041][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:03.041][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.041][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:03.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:03.078][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-11-08 21:26:03.081][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:03.081][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:03.082][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-11-08 21:26:03.082][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:03.082][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:03.082][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:03.083][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-11-08 21:26:03.083][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:03.083][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:03.083][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-08 21:26:03.084][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:03.084][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:03.084][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-11-08 21:26:03.084][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-11-08 21:26:03.085][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-08 21:26:03.086][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:03.086][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:03.086][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:03.086][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:03.086][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:03.087][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:03.087][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-11-08 21:26:03.087][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-11-08 21:26:03.087][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:03.087][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:03.087][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:03.088][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:03.089][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-11-08 21:26:03.090][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-08 21:26:03.090][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-08 21:26:03.091][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-08 21:26:03.091][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-08 21:26:03.100][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:03.101][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-11-08 21:26:03.102][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:03.104][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:03.105][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:03.106][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:03.106][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-11-08 21:26:03.106][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-11-08 21:26:03.107][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-11-08 21:26:03.107][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-11-08 21:26:03.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:03.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:03.107][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-08 21:26:03.107][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-08 21:26:03.108][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:03.115][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:03.115][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:03.116][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:03.116][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:03.116][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:03.117][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-11-08 21:26:03.120][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.120][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-08 21:26:03.120][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.120][biodb::testThat]
biodb.TRACE[2024-11-08 21:26:03.123][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-11-08 21:26:03.123][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:03.125][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:03.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:03.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:03.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.141][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.141][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.150][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.150][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.152][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.152][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.154][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.156][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.156][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.164][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.165][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.166][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.174][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.176][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.178][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.178][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.181][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:03.182][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.195][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.228][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.239][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.241][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:03.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.248][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:03.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.259][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.260][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.262][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.270][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-11-08 21:26:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-08 21:26:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-08 21:26:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-08 21:26:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-08 21:26:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.283][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.299][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.306][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.308][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.309][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.315][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.315][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.316][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.343][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.352][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.352][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.358][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.365][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.366][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.379][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.379][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.388][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.388][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.395][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.395][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.424][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.424][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.428][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.429][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.430][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.430][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.432][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.432][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.436][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.436][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.438][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.438][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.440][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.440][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.440][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.442][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.442][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.444][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.444][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.446][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.452][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.454][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.456][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.461][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.462][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.464][ef$get] fields variable is a list.
biodb.INFO [2024-11-08 21:26:03.466][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.467][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-08 21:26:03.467][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.467][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:03.471][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-11-08 21:26:03.474][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2024-11-08 21:26:03.475][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2024-11-08 21:26:03.476][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2024-11-08 21:26:03.476][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2024-11-08 21:26:03.476][private$doDownload] Downloading HMDB metabolite database at "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2024-11-08 21:26:03.477][cch$addFilesToCache] Moving files to cache [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2024-11-08 21:26:03.477][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-11-08 21:26:03.479][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2024-11-08 21:26:03.479][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-11-08 21:26:03.479][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2024-11-08 21:26:03.480][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/markerec241e40ad50marker".
biodb.TRACE[2024-11-08 21:26:03.480][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2024-11-08 21:26:03.480][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-11-08 21:26:03.481][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-11-08 21:26:03.481][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2024-11-08 21:26:03.481][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2024-11-08 21:26:03.482][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-11-08 21:26:03.482][private$doExtractDownload] Unzipping /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp...
biodb.DEBUG[2024-11-08 21:26:03.486][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2024-11-08 21:26:03.486][private$findXmlDatabaseFile] Found XML file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2024-11-08 21:26:03.487][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2024-11-08 21:26:03.487][private$doExtractDownload] Extract entries from XML file "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml", into "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp".
biodb.TRACE[2024-11-08 21:26:03.490][self$addFilesToCache] Moving files to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2024-11-08 21:26:03.491][private$doAddFilesToCache] Destination files are [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-11-08 21:26:03.491][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-11-08 21:26:03.491][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2024-11-08 21:26:03.492][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/markerec2428326eb4marker".
biodb.TRACE[2024-11-08 21:26:03.492][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2024-11-08 21:26:03.492][self$addFilesToCache] Done adding files.
biodb.TRACE[2024-11-08 21:26:03.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-11-08 21:26:03.493][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-08 21:26:03.494][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-11-08 21:26:03.494][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-11-08 21:26:03.501][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:03.501][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:03.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:03.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:03.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:03.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:03.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:03.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:03.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:03.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.507][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.507][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.511][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.512][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.513][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.514][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.516][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.517][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.517][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.520][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.523][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.523][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.525][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.525][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.525][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.526][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.534][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.535][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.536][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.536][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.540][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:03.540][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.548][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:03.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:03.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:03.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:03.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.614][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-11-08 21:26:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-08 21:26:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-08 21:26:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-08 21:26:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-08 21:26:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-08 21:26:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-08 21:26:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-08 21:26:03.619][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.619][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-08 21:26:03.620][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.620][biodb::testThat]
biodb.TRACE[2024-11-08 21:26:03.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.622][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.622][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-11-08 21:26:03.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.633][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-11-08 21:26:03.633][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-11-08 21:26:03.634][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-11-08 21:26:03.634][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-11-08 21:26:03.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.635][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.635][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:03.635][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.636][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:03.636][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:03.636][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:03.637][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:03.637][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:03.637][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:03.637][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-11-08 21:26:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.641][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:03.642][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:03.642][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-11-08 21:26:03.647][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.647][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.648][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.648][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-11-08 21:26:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.655][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-11-08 21:26:03.670][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-11-08 21:26:03.670][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-11-08 21:26:03.670][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-11-08 21:26:03.674][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.674][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.675][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:03.675][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.675][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:03.681][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:03.681][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:03.682][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:03.682][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:03.682][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:03.682][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-11-08 21:26:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.687][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:03.687][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:03.687][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-11-08 21:26:03.690][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.691][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.691][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.691][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-11-08 21:26:03.695][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.696][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.698][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-11-08 21:26:03.698][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-11-08 21:26:03.699][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-11-08 21:26:03.699][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-11-08 21:26:03.699][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.700][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:03.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.701][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:03.701][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:03.701][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:03.701][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:03.702][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:03.702][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:03.702][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-11-08 21:26:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.704][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.704][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.706][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:03.706][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:03.707][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-11-08 21:26:03.711][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.711][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-08 21:26:03.711][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.712][biodb::testThat]
biodb.TRACE[2024-11-08 21:26:03.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.723][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-11-08 21:26:03.723][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-11-08 21:26:03.723][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-11-08 21:26:03.724][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.724][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.724][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:03.725][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:03.725][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:03.725][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:03.726][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:03.726][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:03.726][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:03.726][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:03.726][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-11-08 21:26:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:03.731][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:03.731][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-11-08 21:26:03.735][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.736][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-08 21:26:03.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.736][biodb::testThat]
biodb.TRACE[2024-11-08 21:26:03.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-08 21:26:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-08 21:26:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-08 21:26:03.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-08 21:26:03.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-08 21:26:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-08 21:26:03.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-08 21:26:03.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:03.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-08 21:26:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-08 21:26:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-08 21:26:03.766][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.767][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-08 21:26:03.767][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.767][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.769][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.770][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-08 21:26:03.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.770][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.772][biodb::testThat]
biodb.INFO [2024-11-08 21:26:03.773][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-08 21:26:03.773][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:03.773][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:03.774][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-11-08 21:26:12.853][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-11-08 21:26:12.872][biodb::testThat]
biodb.INFO [2024-11-08 21:26:12.873][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-08 21:26:12.873][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:12.873][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.568][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-11-08 21:26:13.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.590][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.591][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.591][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.592][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.592][ef$get] fields variable is a list.
biodb.INFO [2024-11-08 21:26:13.593][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.593][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-11-08 21:26:13.593][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.594][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.594][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-11-08 21:26:13.612][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-08 21:26:13.613][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.613][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-11-08 21:26:13.618][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-11-08 21:26:13.618][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-08 21:26:13.619][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-08 21:26:13.619][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-11-08 21:26:13.619][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.620][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:13.620][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:13.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:13.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:13.624][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:13.644][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-08 21:26:13.644][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-11-08 21:26:13.649][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.650][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-11-08 21:26:13.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.650][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.653][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-11-08 21:26:13.653][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-11-08 21:26:13.654][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-08 21:26:13.654][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.655][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-11-08 21:26:13.655][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-11-08 21:26:13.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-08 21:26:13.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-08 21:26:13.656][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-11-08 21:26:13.656][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.657][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:13.657][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:13.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:13.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:13.661][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.662][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:13.669][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-11-08 21:26:13.669][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-11-08 21:26:13.669][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-11-08 21:26:13.676][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.676][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-11-08 21:26:13.676][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.676][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.683][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.684][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-11-08 21:26:13.684][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.684][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.685][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.685][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.686][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:13.686][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.686][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:13.687][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:13.687][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:13.687][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:13.687][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-11-08 21:26:13.690][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.690][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-11-08 21:26:13.690][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.691][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.692][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:13.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.693][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:13.693][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:13.693][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:13.693][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:13.694][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-11-08 21:26:13.696][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.697][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.697][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.698][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.698][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.699][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.699][ef$get] fields variable is a list.
biodb.INFO [2024-11-08 21:26:13.699][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-08 21:26:13.700][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-11-08 21:26:13.702][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-11-08 21:26:13.703][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-08 21:26:13.703][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.703][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.704][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-08 21:26:13.705][biodb::testContext]
biodb.INFO [2024-11-08 21:26:13.707][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:13.708][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-11-08 21:26:13.708][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:13.708][biodb::testContext]
biodb.INFO [2024-11-08 21:26:13.710][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-08 21:26:13.710][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-08 21:26:13.712][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:13.712][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-08 21:26:13.712][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-08 21:26:13.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.713][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-08 21:26:13.714][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-08 21:26:13.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.714][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-08 21:26:13.715][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-08 21:26:13.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.716][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-08 21:26:13.716][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-08 21:26:13.716][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-08 21:26:13.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.717][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-08 21:26:13.717][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-08 21:26:13.718][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-08 21:26:13.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.719][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-08 21:26:13.719][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-08 21:26:13.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.720][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-08 21:26:13.720][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-08 21:26:13.720][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-08 21:26:13.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.721][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-08 21:26:13.721][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-08 21:26:13.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.722][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-08 21:26:13.723][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-08 21:26:13.723][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-08 21:26:13.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.724][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-08 21:26:13.724][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-08 21:26:13.724][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-08 21:26:13.725][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-08 21:26:13.725][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-08 21:26:13.725][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-08 21:26:13.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.726][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-08 21:26:13.726][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-08 21:26:13.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.727][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-08 21:26:13.727][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-08 21:26:13.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.728][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-08 21:26:13.728][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-08 21:26:13.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.729][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-08 21:26:13.730][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-08 21:26:13.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.731][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-08 21:26:13.731][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-08 21:26:13.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.732][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-08 21:26:13.732][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-08 21:26:13.736][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-08 21:26:13.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.737][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-08 21:26:13.737][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-08 21:26:13.738][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-08 21:26:13.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.739][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-08 21:26:13.739][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.740][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-08 21:26:13.740][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.740][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:13.742][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.743][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.743][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.743][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.743][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-08 21:26:13.744][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:13.744][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.744][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-08 21:26:13.744][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-08 21:26:13.745][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:13.746][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.746][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:13.746][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.747][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.747][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.747][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:13.748][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:13.748][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.748][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.748][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-08 21:26:13.749][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.749][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-08 21:26:13.750][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.750][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:13.750][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.750][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.751][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.751][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.751][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-08 21:26:13.751][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:13.752][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.752][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-08 21:26:13.752][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:13.752][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:13.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.754][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:13.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.754][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.755][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.755][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:13.755][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:13.755][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.756][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.756][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-08 21:26:13.756][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.757][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-08 21:26:13.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:13.757][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.758][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.758][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.758][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.758][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-08 21:26:13.759][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:13.759][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.759][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-08 21:26:13.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:13.760][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.760][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.760][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.760][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:13.761][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.761][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:13.761][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.762][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.762][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.762][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:13.763][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:13.763][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.763][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.763][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-08 21:26:13.764][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.764][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-08 21:26:13.764][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.765][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:13.765][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.765][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.765][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.766][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.766][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-08 21:26:13.766][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:13.766][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.767][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-08 21:26:13.767][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:13.767][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.767][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.768][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.768][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:13.768][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.768][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.769][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:13.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.771][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.771][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.772][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:13.772][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:13.772][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.772][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.773][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:13.773][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.792][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-08 21:26:13.792][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-08 21:26:13.793][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-08 21:26:13.793][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-08 21:26:13.793][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-08 21:26:13.794][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-08 21:26:13.794][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-08 21:26:13.794][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-08 21:26:13.795][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-08 21:26:13.795][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-08 21:26:13.795][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-08 21:26:13.796][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-08 21:26:13.796][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-08 21:26:13.797][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-08 21:26:13.799][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-08 21:26:13.799][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-08 21:26:13.799][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-08 21:26:13.800][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-08 21:26:13.800][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-08 21:26:13.801][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-08 21:26:13.801][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-08 21:26:13.801][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-08 21:26:13.802][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-08 21:26:13.802][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-08 21:26:13.802][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-08 21:26:13.803][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-08 21:26:13.803][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-08 21:26:13.803][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-08 21:26:13.804][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-08 21:26:13.804][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-08 21:26:13.804][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-08 21:26:13.805][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-08 21:26:13.805][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-08 21:26:13.805][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-08 21:26:13.806][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-08 21:26:13.806][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-08 21:26:13.807][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-08 21:26:13.807][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-08 21:26:13.807][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-08 21:26:13.808][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-08 21:26:13.808][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-08 21:26:13.808][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-08 21:26:13.809][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-08 21:26:13.809][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-08 21:26:13.809][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-08 21:26:13.810][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-08 21:26:13.810][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-08 21:26:13.810][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-08 21:26:13.811][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-08 21:26:13.811][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-08 21:26:13.812][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-08 21:26:13.812][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-08 21:26:13.812][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-08 21:26:13.813][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-08 21:26:13.813][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-08 21:26:13.813][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-08 21:26:13.814][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-08 21:26:13.814][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-08 21:26:13.814][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-08 21:26:13.815][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-08 21:26:13.815][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-08 21:26:13.815][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-08 21:26:13.816][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-08 21:26:13.816][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-08 21:26:13.817][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-08 21:26:13.817][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-08 21:26:13.817][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-08 21:26:13.818][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-08 21:26:13.818][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-08 21:26:13.818][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-08 21:26:13.819][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-08 21:26:13.819][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-08 21:26:13.819][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-08 21:26:13.820][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-08 21:26:13.820][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-08 21:26:13.820][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-08 21:26:13.821][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-08 21:26:13.821][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-08 21:26:13.822][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-08 21:26:13.822][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-08 21:26:13.822][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-08 21:26:13.823][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-08 21:26:13.823][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-08 21:26:13.823][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-08 21:26:13.824][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-08 21:26:13.824][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:13.824][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.827][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:13.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:13.855][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-11-08 21:26:13.856][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:13.856][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.856][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.857][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.857][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:13.857][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.857][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-11-08 21:26:13.858][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.858][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.858][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-08 21:26:13.858][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-11-08 21:26:13.859][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-11-08 21:26:13.860][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:13.860][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:13.860][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-11-08 21:26:13.860][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-11-08 21:26:13.860][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-08 21:26:13.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.861][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:13.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:13.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:13.862][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:13.862][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-11-08 21:26:13.862][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-11-08 21:26:13.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:13.862][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:13.863][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:13.863][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:13.863][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-11-08 21:26:13.864][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-08 21:26:13.864][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-08 21:26:13.864][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-08 21:26:13.865][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-08 21:26:13.866][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:13.866][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-11-08 21:26:13.866][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:13.867][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:13.867][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:13.867][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:13.868][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-11-08 21:26:13.868][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-11-08 21:26:13.868][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-11-08 21:26:13.868][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-11-08 21:26:13.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:13.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:13.869][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-08 21:26:13.869][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-08 21:26:13.869][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:13.870][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:13.870][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:13.870][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:13.871][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:13.871][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:13.871][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-11-08 21:26:13.872][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.872][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-11-08 21:26:13.872][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.872][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.874][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:13.875][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.875][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:13.875][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:13.876][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:13.876][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:13.876][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:13.877][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-11-08 21:26:13.879][biodb::testThat]
biodb.INFO [2024-11-08 21:26:13.879][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-11-08 21:26:13.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:13.880][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:13.880][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-11-08 21:26:13.880][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-08 21:26:13.881][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:13.881][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-11-08 21:26:13.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-11-08 21:26:13.882][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-08 21:26:13.883][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-11-08 21:26:13.883][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-11-08 21:26:13.885][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:13.886][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:13.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:13.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:13.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:13.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:13.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:13.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:13.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:13.890][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.891][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.892][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.893][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.893][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.895][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.895][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.896][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.897][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.897][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.897][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.898][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.901][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.901][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.904][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.907][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.907][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.908][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.909][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.909][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.910][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:13.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:13.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:13.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:13.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.920][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.923][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.924][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:13.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:13.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:13.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.928][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:13.928][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.928][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:13.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:13.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.937][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:13.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.957][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:13.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:13.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:13.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:13.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:13.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:13.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:13.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:13.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:13.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:13.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.008][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-11-08 21:26:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-08 21:26:14.014][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-08 21:26:14.014][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-11-08 21:26:14.014][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-11-08 21:26:14.015][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-08 21:26:14.015][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.015][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.016][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-08 21:26:14.017][biodb::testContext]
biodb.INFO [2024-11-08 21:26:14.018][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:14.018][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-11-08 21:26:14.018][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-08 21:26:14.018][biodb::testContext]
biodb.INFO [2024-11-08 21:26:14.020][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-08 21:26:14.020][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-08 21:26:14.022][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:14.022][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-08 21:26:14.022][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-08 21:26:14.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.023][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-08 21:26:14.023][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-08 21:26:14.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.024][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-08 21:26:14.025][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-08 21:26:14.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.026][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-08 21:26:14.026][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-08 21:26:14.026][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-08 21:26:14.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.027][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-08 21:26:14.027][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-08 21:26:14.027][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-08 21:26:14.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.030][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-08 21:26:14.031][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-08 21:26:14.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.032][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-08 21:26:14.032][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-08 21:26:14.032][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-08 21:26:14.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.033][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-08 21:26:14.033][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-08 21:26:14.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.034][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-08 21:26:14.034][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-08 21:26:14.035][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-08 21:26:14.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.036][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-08 21:26:14.036][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-08 21:26:14.036][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-08 21:26:14.036][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-08 21:26:14.037][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-08 21:26:14.037][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-08 21:26:14.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.038][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-08 21:26:14.038][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-08 21:26:14.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.039][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-08 21:26:14.039][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-08 21:26:14.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.040][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-08 21:26:14.040][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-08 21:26:14.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.041][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-08 21:26:14.041][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-08 21:26:14.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.042][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-08 21:26:14.043][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-08 21:26:14.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.043][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-08 21:26:14.044][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-08 21:26:14.048][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-08 21:26:14.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.049][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-08 21:26:14.050][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-08 21:26:14.050][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-08 21:26:14.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.051][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-08 21:26:14.051][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.052][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-08 21:26:14.052][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.052][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:14.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.053][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.053][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.053][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-08 21:26:14.054][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:14.054][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.054][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-08 21:26:14.054][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-08 21:26:14.055][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:14.056][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.056][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:14.056][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.057][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.057][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:14.058][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:14.058][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.058][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.059][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-08 21:26:14.059][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.059][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-08 21:26:14.060][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:14.060][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.062][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.063][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.063][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.063][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-08 21:26:14.063][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:14.064][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.064][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-08 21:26:14.064][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:14.064][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:14.065][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.066][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:14.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.067][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.067][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.067][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:14.067][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:14.067][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.068][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.068][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-08 21:26:14.069][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.069][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-08 21:26:14.069][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.069][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:14.070][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.070][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.070][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.070][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.071][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-08 21:26:14.071][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:14.071][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.071][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-08 21:26:14.072][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:14.072][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.072][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.072][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.073][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:14.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.073][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:14.074][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.074][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.074][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:14.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:14.075][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.075][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.076][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-08 21:26:14.076][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.076][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-08 21:26:14.077][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.077][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:14.077][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.077][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.077][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.078][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.078][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-08 21:26:14.078][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:14.078][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.079][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-08 21:26:14.079][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:14.079][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.079][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.080][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.080][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-08 21:26:14.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.081][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:14.081][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.081][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.082][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.082][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:14.082][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:14.082][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.083][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.083][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:14.083][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.104][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-08 21:26:14.105][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-08 21:26:14.105][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-08 21:26:14.105][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-08 21:26:14.106][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-08 21:26:14.106][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-08 21:26:14.106][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-08 21:26:14.107][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-08 21:26:14.107][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-08 21:26:14.107][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-08 21:26:14.108][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-08 21:26:14.108][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-08 21:26:14.108][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-08 21:26:14.109][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-08 21:26:14.109][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-08 21:26:14.110][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-08 21:26:14.110][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-08 21:26:14.110][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-08 21:26:14.111][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-08 21:26:14.111][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-08 21:26:14.111][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-08 21:26:14.112][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-08 21:26:14.112][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-08 21:26:14.112][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-08 21:26:14.113][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-08 21:26:14.113][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-08 21:26:14.113][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-08 21:26:14.114][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-08 21:26:14.114][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-08 21:26:14.115][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-08 21:26:14.117][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-08 21:26:14.117][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-08 21:26:14.117][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-08 21:26:14.118][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-08 21:26:14.118][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-08 21:26:14.119][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-08 21:26:14.119][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-08 21:26:14.119][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-08 21:26:14.120][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-08 21:26:14.120][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-08 21:26:14.120][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-08 21:26:14.121][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-08 21:26:14.121][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-08 21:26:14.121][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-08 21:26:14.122][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-08 21:26:14.122][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-08 21:26:14.122][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-08 21:26:14.123][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-08 21:26:14.123][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-08 21:26:14.123][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-08 21:26:14.124][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-08 21:26:14.124][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-08 21:26:14.125][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-08 21:26:14.125][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-08 21:26:14.125][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-08 21:26:14.126][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-08 21:26:14.126][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-08 21:26:14.126][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-08 21:26:14.127][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-08 21:26:14.127][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-08 21:26:14.127][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-08 21:26:14.128][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-08 21:26:14.128][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-08 21:26:14.128][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-08 21:26:14.129][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-08 21:26:14.129][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-08 21:26:14.129][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-08 21:26:14.130][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-08 21:26:14.130][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-08 21:26:14.131][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-08 21:26:14.131][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-08 21:26:14.131][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-08 21:26:14.132][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-08 21:26:14.132][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-08 21:26:14.132][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-08 21:26:14.133][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-08 21:26:14.133][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-08 21:26:14.133][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-08 21:26:14.134][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-08 21:26:14.134][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-08 21:26:14.135][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-08 21:26:14.135][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-08 21:26:14.136][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-08 21:26:14.136][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-08 21:26:14.137][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-08 21:26:14.137][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-08 21:26:14.137][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.137][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-08 21:26:14.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.167][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-11-08 21:26:14.168][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:14.168][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.168][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.169][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.169][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-08 21:26:14.169][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.170][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-11-08 21:26:14.170][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.172][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.173][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-08 21:26:14.173][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-08 21:26:14.173][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.173][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-11-08 21:26:14.174][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-08 21:26:14.175][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-08 21:26:14.175][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-11-08 21:26:14.175][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-11-08 21:26:14.175][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-08 21:26:14.175][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.176][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-08 21:26:14.176][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-08 21:26:14.176][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-08 21:26:14.176][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-08 21:26:14.176][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-11-08 21:26:14.176][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-11-08 21:26:14.177][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:14.177][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:14.177][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-08 21:26:14.177][self$setPropertyValue]
biodb.DEBUG[2024-11-08 21:26:14.178][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-11-08 21:26:14.178][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-08 21:26:14.179][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-08 21:26:14.179][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-08 21:26:14.180][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-08 21:26:14.181][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:14.181][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-11-08 21:26:14.181][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:14.182][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:14.182][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:14.182][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:14.183][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-11-08 21:26:14.183][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-11-08 21:26:14.183][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-11-08 21:26:14.183][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-11-08 21:26:14.183][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-08 21:26:14.184][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-08 21:26:14.184][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-11-08 21:26:14.184][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-11-08 21:26:14.184][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-11-08 21:26:14.185][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:14.185][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:14.185][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:14.186][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-11-08 21:26:14.186][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-08 21:26:14.186][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-11-08 21:26:14.187][biodb::testThat]
biodb.INFO [2024-11-08 21:26:14.187][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-11-08 21:26:14.187][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-08 21:26:14.187][biodb::testThat]
biodb.DEBUG[2024-11-08 21:26:14.188][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-11-08 21:26:14.188][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-11-08 21:26:14.188][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-11-08 21:26:14.189][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.190][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.190][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:14.191][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.191][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:14.191][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:14.192][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:14.192][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:14.192][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:14.192][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:14.193][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-11-08 21:26:14.193][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-11-08 21:26:14.193][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-08 21:26:14.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-11-08 21:26:14.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-11-08 21:26:14.195][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-08 21:26:14.196][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-11-08 21:26:14.196][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-11-08 21:26:14.197][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:14.197][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:14.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:14.202][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.207][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.207][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.209][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.209][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.211][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.211][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.214][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.215][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.216][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.222][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.222][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.224][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.224][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.226][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.227][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.239][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.241][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.241][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.244][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.246][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:14.246][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.247][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.252][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.279][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.319][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.324][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.331][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-11-08 21:26:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.336][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:14.336][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:14.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.339][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-11-08 21:26:14.340][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-08 21:26:14.340][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.340][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-11-08 21:26:14.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-11-08 21:26:14.341][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-08 21:26:14.342][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-11-08 21:26:14.342][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-11-08 21:26:14.343][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-11-08 21:26:14.343][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-11-08 21:26:14.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:14.347][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.349][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.349][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.351][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.352][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.355][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.356][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.356][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.357][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.360][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.360][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.366][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.366][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.375][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.378][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.380][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.380][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.386][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:14.386][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.387][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-11-08 21:26:14.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.392][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.393][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-08 21:26:14.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.394][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.396][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-11-08 21:26:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-11-08 21:26:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-11-08 21:26:14.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-08 21:26:14.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-08 21:26:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-11-08 21:26:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.416][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-08 21:26:14.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-08 21:26:14.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-08 21:26:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-08 21:26:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-11-08 21:26:14.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-08 21:26:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-08 21:26:14.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.441][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-11-08 21:26:14.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-11-08 21:26:14.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-11-08 21:26:14.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:14.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-11-08 21:26:14.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-08 21:26:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-08 21:26:14.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-08 21:26:14.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-11-08 21:26:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-08 21:26:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-08 21:26:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.471][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-11-08 21:26:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.476][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:14.476][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:14.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.481][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-11-08 21:26:14.481][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-11-08 21:26:14.481][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-11-08 21:26:14.482][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.482][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.482][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:14.483][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.483][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:14.483][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:14.484][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:14.484][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:14.484][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:14.485][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:14.485][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-11-08 21:26:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.492][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:14.493][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:14.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.506][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-11-08 21:26:14.507][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:14.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-08 21:26:14.511][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-11-08 21:26:14.512][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-11-08 21:26:14.512][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-11-08 21:26:14.512][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.513][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.513][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-11-08 21:26:14.513][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-11-08 21:26:14.514][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-11-08 21:26:14.514][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-11-08 21:26:14.514][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-11-08 21:26:14.515][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-11-08 21:26:14.515][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-11-08 21:26:14.515][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-11-08 21:26:14.515][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-11-08 21:26:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.517][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.523][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-11-08 21:26:14.523][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-11-08 21:26:14.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-08 21:26:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.531][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-08 21:26:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-08 21:26:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-08 21:26:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-08 21:26:14.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-08 21:26:14.537][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-11-08 21:26:14.537][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-11-08 21:26:14.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-08 21:26:14.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-08 21:26:14.542][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-08 21:26:14.543][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-11-08 21:26:14.543][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-11-08 21:26:14.543][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-08 21:26:14.544][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-08 21:26:14.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-08 21:26:14.544][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-08 21:26:14.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-08 21:26:14.545][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-08 21:26:14.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.490   0.127  12.367

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings