Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-08-28 11:38 -0400 (Thu, 28 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4604
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4545
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-08-25 13:40 -0400 (Mon, 25 Aug 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_21
git_last_commit: a7f0a0f
git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  


CHECK results for biodbHmdb on nebbiolo1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.14.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbHmdb_1.14.0.tar.gz
StartedAt: 2025-08-27 21:00:06 -0400 (Wed, 27 Aug 2025)
EndedAt: 2025-08-27 21:01:46 -0400 (Wed, 27 Aug 2025)
EllapsedTime: 100.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   ‘bool EntryMaker::closed’ [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.


Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   ‘bool EntryMaker::closed’ [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-08-27 21:00:52.457][biodb::testContext]
biodb.INFO [2025-08-27 21:00:52.459][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:00:52.460][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-08-27 21:00:52.461][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:00:52.462][biodb::testContext]
biodb.INFO [2025-08-27 21:00:52.463][biodb::testThat]
biodb.INFO [2025-08-27 21:00:52.464][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-08-27 21:00:52.465][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:52.466][biodb::testThat]
biodb.INFO [2025-08-27 21:00:52.548][biodb::testContext]
biodb.INFO [2025-08-27 21:00:52.549][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:00:52.550][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-08-27 21:00:52.551][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:00:52.552][biodb::testContext]
biodb.INFO [2025-08-27 21:00:52.560][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-27 21:00:52.562][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-27 21:00:52.568][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:00:52.569][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-27 21:00:52.570][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-27 21:00:52.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.574][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-27 21:00:52.597][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-27 21:00:52.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.601][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-27 21:00:52.602][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-27 21:00:52.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.605][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-27 21:00:52.606][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-27 21:00:52.607][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-27 21:00:52.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.611][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-27 21:00:52.612][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-27 21:00:52.613][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-27 21:00:52.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.616][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-27 21:00:52.617][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-27 21:00:52.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.621][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-27 21:00:52.622][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-27 21:00:52.623][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-27 21:00:52.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.626][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-27 21:00:52.628][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-27 21:00:52.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.631][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-27 21:00:52.632][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-27 21:00:52.633][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-27 21:00:52.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.637][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-27 21:00:52.638][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-27 21:00:52.639][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-27 21:00:52.640][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-27 21:00:52.641][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-27 21:00:52.642][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-27 21:00:52.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.645][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-27 21:00:52.652][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-27 21:00:52.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.657][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-27 21:00:52.659][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-27 21:00:52.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.663][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-27 21:00:52.664][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-27 21:00:52.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.668][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-27 21:00:52.669][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-27 21:00:52.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.673][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-27 21:00:52.674][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-27 21:00:52.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.678][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-27 21:00:52.679][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-27 21:00:52.683][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-27 21:00:52.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.687][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-27 21:00:52.688][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-27 21:00:52.689][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-27 21:00:52.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.697][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-27 21:00:52.735][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.752][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-27 21:00:52.754][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.755][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:00:52.756][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.757][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.758][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.759][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.760][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-27 21:00:52.761][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:00:52.762][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.763][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-27 21:00:52.764][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:00:52.766][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.767][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.768][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:00:52.768][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-27 21:00:52.768][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-27 21:00:52.768][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-27 21:00:52.768][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-27 21:00:52.782][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:00:52.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.785][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:00:52.786][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.787][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.788][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.789][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.790][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:00:52.791][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:00:52.792][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.793][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.794][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-27 21:00:52.796][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.797][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-27 21:00:52.798][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.799][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:00:52.800][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.801][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.803][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.804][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.805][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-27 21:00:52.806][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:00:52.807][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.808][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-27 21:00:52.809][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:00:52.810][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.811][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.812][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:00:52.812][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-27 21:00:52.812][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-27 21:00:52.812][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-27 21:00:52.812][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-27 21:00:52.813][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:00:52.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.815][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.816][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:00:52.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.818][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.819][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.820][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.822][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:00:52.823][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:00:52.824][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.825][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.826][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-27 21:00:52.828][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.829][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-27 21:00:52.830][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.831][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:00:52.832][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.833][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.834][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.835][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.836][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-27 21:00:52.837][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:00:52.838][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.839][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-27 21:00:52.840][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:00:52.842][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.843][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.844][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.845][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:00:52.846][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.847][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.848][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:00:52.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.851][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.852][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.853][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:00:52.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:00:52.855][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.856][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.857][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-27 21:00:52.859][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.860][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-27 21:00:52.861][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.862][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:00:52.863][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.864][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.865][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.866][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-27 21:00:52.867][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:00:52.868][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.869][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-27 21:00:52.870][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:00:52.871][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.872][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:52.873][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.874][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:00:52.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.876][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.877][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:00:52.878][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:52.879][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:52.880][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:00:52.881][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.882][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:00:52.883][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:00:52.884][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:52.885][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:52.888][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:00:52.889][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:52.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:52.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:52.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:52.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:52.971][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-27 21:00:52.976][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-27 21:00:52.978][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-27 21:00:52.979][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-27 21:00:52.980][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-27 21:00:52.982][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-27 21:00:52.983][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-27 21:00:52.984][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-27 21:00:52.986][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-27 21:00:52.987][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-27 21:00:52.988][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-27 21:00:52.990][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-27 21:00:52.991][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-27 21:00:52.992][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-27 21:00:52.994][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-27 21:00:52.995][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-27 21:00:52.996][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-27 21:00:52.998][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-27 21:00:52.999][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-27 21:00:53.000][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-27 21:00:53.002][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-27 21:00:53.003][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-27 21:00:53.004][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-27 21:00:53.006][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-27 21:00:53.007][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-27 21:00:53.008][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-27 21:00:53.010][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-27 21:00:53.011][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-27 21:00:53.012][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-27 21:00:53.014][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-27 21:00:53.015][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-27 21:00:53.016][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-27 21:00:53.018][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-27 21:00:53.019][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-27 21:00:53.020][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-27 21:00:53.022][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-27 21:00:53.023][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-27 21:00:53.024][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-27 21:00:53.026][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-27 21:00:53.027][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-27 21:00:53.028][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-27 21:00:53.030][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-27 21:00:53.031][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-27 21:00:53.032][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-27 21:00:53.034][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-27 21:00:53.035][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-27 21:00:53.037][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-27 21:00:53.038][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-27 21:00:53.039][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-27 21:00:53.041][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-27 21:00:53.042][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-27 21:00:53.043][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-27 21:00:53.045][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-27 21:00:53.046][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-27 21:00:53.047][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-27 21:00:53.049][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-27 21:00:53.050][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-27 21:00:53.051][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-27 21:00:53.053][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-27 21:00:53.054][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-27 21:00:53.055][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-27 21:00:53.056][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-27 21:00:53.058][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-27 21:00:53.059][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-27 21:00:53.061][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-27 21:00:53.062][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-27 21:00:53.063][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-27 21:00:53.065][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-27 21:00:53.066][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-27 21:00:53.067][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-27 21:00:53.069][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-27 21:00:53.070][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-27 21:00:53.071][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-27 21:00:53.073][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-27 21:00:53.074][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-27 21:00:53.075][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-27 21:00:53.077][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-27 21:00:53.078][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-27 21:00:53.079][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-27 21:00:53.081][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-27 21:00:53.082][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-27 21:00:53.083][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-27 21:00:53.085][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-27 21:00:53.091][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-27 21:00:53.092][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-27 21:00:53.095][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:00:53.096][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.098][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:00:53.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:00:53.240][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-08-27 21:00:53.249][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:00:53.251][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:53.253][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-27 21:00:53.254][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:53.255][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:00:53.256][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:53.257][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-08-27 21:00:53.258][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:53.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:00:53.260][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-27 21:00:53.261][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:00:53.262][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:53.263][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-08-27 21:00:53.263][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-08-27 21:00:53.265][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-08-27 21:00:53.266][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-27 21:00:53.267][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:00:53.267][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-08-27 21:00:53.267][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-08-27 21:00:53.268][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-27 21:00:53.269][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:53.270][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:53.271][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:00:53.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:00:53.272][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:00:53.273][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:00:53.274][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-27 21:00:53.274][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-08-27 21:00:53.275][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:00:53.276][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:00:53.277][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-27 21:00:53.278][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:00:53.284][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-08-27 21:00:53.286][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-27 21:00:53.288][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-27 21:00:53.289][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-27 21:00:53.291][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-27 21:00:53.313][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:00:53.314][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-08-27 21:00:53.319][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:00:53.322][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:00:53.327][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:00:53.328][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:00:53.329][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-08-27 21:00:53.330][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-08-27 21:00:53.331][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-27 21:00:53.331][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-08-27 21:00:53.332][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:00:53.333][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:00:53.341][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-08-27 21:00:53.341][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-08-27 21:00:53.343][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:00:53.360][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:00:53.361][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:00:53.362][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:00:53.364][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:00:53.365][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:00:53.366][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-08-27 21:00:53.373][biodb::testThat]
biodb.INFO [2025-08-27 21:00:53.374][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-27 21:00:53.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:53.376][biodb::testThat]
biodb.TRACE[2025-08-27 21:00:53.380][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-08-27 21:00:53.382][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:00:53.386][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:00:53.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:00:53.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:53.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:53.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:53.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:53.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:53.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:00:53.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.434][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.435][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.462][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.466][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.467][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.474][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.475][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.491][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.498][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.521][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.522][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.530][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:53.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:53.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:53.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:53.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.578][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:53.579][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:53.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:53.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:53.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:53.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.594][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:00:53.595][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:00:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.657][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.668][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:53.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:53.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.731][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:53.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:53.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:53.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:53.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:00:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:00:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:53.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:53.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:53.952][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-08-27 21:00:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-27 21:00:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-27 21:00:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-27 21:00:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-27 21:00:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-27 21:00:53.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-27 21:00:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-27 21:00:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-27 21:00:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.074][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.086][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.087][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.090][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.112][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.113][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.223][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.238][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.243][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.251][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.252][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.298][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.306][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.307][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.364][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.365][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.392][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.417][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.418][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.443][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.516][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.529][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.530][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.551][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.552][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.558][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.559][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.572][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.573][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.581][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.587][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.588][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.594][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.595][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.601][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.602][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.663][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.664][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.673][ef$get] fields variable is a list.
biodb.INFO [2025-08-27 21:00:54.680][biodb::testThat]
biodb.INFO [2025-08-27 21:00:54.681][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-27 21:00:54.682][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:54.683][biodb::testThat]
biodb.DEBUG[2025-08-27 21:00:54.696][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-08-27 21:00:54.703][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-27 21:00:54.707][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:54.709][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-27 21:00:54.711][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-08-27 21:00:54.712][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-27 21:00:54.714][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-08-27 21:00:54.715][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-27 21:00:54.738][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:00:54.740][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:00:54.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:00:54.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:00:54.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:00:54.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:00:54.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:00:54.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:00:54.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:00:54.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.766][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.767][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.774][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.775][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.783][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.784][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.799][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.800][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.807][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:54.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.824][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.825][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.832][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.834][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.873][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.881][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.882][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.901][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:00:54.902][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:00:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:54.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:00:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:00:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:00:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:00:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:00:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:00:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:00:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:55.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:00:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:00:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:00:55.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:00:55.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:00:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:00:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:00:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:55.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:00:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:00:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:00:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:00:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:00:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.167][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:55.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:00:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:00:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:00:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.206][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-08-27 21:00:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-27 21:00:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-27 21:00:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-27 21:00:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-27 21:00:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-27 21:00:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-27 21:00:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-27 21:00:55.225][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.226][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-27 21:00:55.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:55.228][biodb::testThat]
biodb.TRACE[2025-08-27 21:00:55.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.234][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.235][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-08-27 21:00:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.273][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-08-27 21:00:55.275][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-08-27 21:00:55.275][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-27 21:00:55.276][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-27 21:00:55.278][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.279][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.281][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:00:55.282][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.283][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:00:55.284][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:00:55.285][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:00:55.286][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:00:55.287][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:00:55.292][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:00:55.293][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-27 21:00:55.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.310][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:00:55.311][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:00:55.312][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-08-27 21:00:55.322][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.323][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.325][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.326][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-08-27 21:00:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.344][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.350][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-08-27 21:00:55.401][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-27 21:00:55.402][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-08-27 21:00:55.403][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-08-27 21:00:55.420][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.422][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.423][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:00:55.424][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.425][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:00:55.440][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:00:55.441][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:00:55.442][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:00:55.443][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:00:55.444][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:00:55.445][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-27 21:00:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:00:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:00:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.462][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:00:55.463][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:00:55.464][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-08-27 21:00:55.474][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.476][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.478][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.479][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-08-27 21:00:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.503][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-08-27 21:00:55.505][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-08-27 21:00:55.506][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-08-27 21:00:55.507][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-08-27 21:00:55.508][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.510][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.511][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:00:55.512][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.513][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:00:55.514][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:00:55.515][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:00:55.516][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:00:55.517][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:00:55.518][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:00:55.519][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-27 21:00:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:00:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.541][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:00:55.542][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:00:55.542][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-08-27 21:00:55.556][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.557][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-27 21:00:55.558][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:55.559][biodb::testThat]
biodb.TRACE[2025-08-27 21:00:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.589][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-08-27 21:00:55.590][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-27 21:00:55.591][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-27 21:00:55.593][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.594][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.596][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:00:55.597][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:00:55.598][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:00:55.599][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:00:55.600][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:00:55.601][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:00:55.602][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:00:55.603][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:00:55.604][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-27 21:00:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:00:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:00:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:00:55.621][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:00:55.622][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-08-27 21:00:55.635][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.636][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-27 21:00:55.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:55.638][biodb::testThat]
biodb.TRACE[2025-08-27 21:00:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-27 21:00:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-27 21:00:55.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.673][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-27 21:00:55.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-27 21:00:55.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-27 21:00:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-27 21:00:55.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-27 21:00:55.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:00:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-27 21:00:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-27 21:00:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:00:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-27 21:00:55.737][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.738][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-27 21:00:55.739][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:55.740][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.747][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.748][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-27 21:00:55.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:55.750][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.757][biodb::testThat]
biodb.INFO [2025-08-27 21:00:55.758][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-27 21:00:55.759][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:00:55.760][biodb::testThat]
biodb.DEBUG[2025-08-27 21:00:55.763][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-08-27 21:01:17.925][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-08-27 21:01:18.008][biodb::testThat]
biodb.INFO [2025-08-27 21:01:18.010][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-27 21:01:18.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:18.015][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:35.421][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-08-27 21:01:35.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:35.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:35.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.466][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:35.468][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.471][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:35.495][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:35.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.497][ef$get] fields variable is a list.
biodb.INFO [2025-08-27 21:01:35.499][biodb::testThat]
biodb.INFO [2025-08-27 21:01:35.500][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-08-27 21:01:35.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:35.502][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:35.504][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-08-27 21:01:35.554][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-08-27 21:01:35.556][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-08-27 21:01:35.557][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-08-27 21:01:35.559][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-08-27 21:01:35.560][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-08-27 21:01:35.562][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-08-27 21:01:35.563][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-08-27 21:01:35.565][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-08-27 21:01:35.566][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-08-27 21:01:35.567][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-08-27 21:01:35.569][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker1df2682aa449e4marker".
biodb.TRACE[2025-08-27 21:01:35.570][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-08-27 21:01:35.571][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-08-27 21:01:35.572][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-08-27 21:01:35.574][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-08-27 21:01:35.575][private$doExtractDownload] Extracting content of downloaded',
                    ' HMDB metabolite database...
biodb.DEBUG[2025-08-27 21:01:35.576][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-08-27 21:01:35.577][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2025-08-27 21:01:35.584][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-08-27 21:01:35.585][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-08-27 21:01:35.586][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-08-27 21:01:35.587][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2025-08-27 21:01:35.595][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-08-27 21:01:35.596][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-08-27 21:01:35.597][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-08-27 21:01:35.598][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-08-27 21:01:35.600][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker1df2683777ca67marker".
biodb.TRACE[2025-08-27 21:01:35.601][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-08-27 21:01:35.602][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-08-27 21:01:35.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-08-27 21:01:35.651][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-27 21:01:35.652][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-27 21:01:35.653][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-27 21:01:35.655][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.656][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:01:35.657][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:01:35.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:35.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:35.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:35.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:35.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:35.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:35.702][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-08-27 21:01:35.703][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-08-27 21:01:35.719][biodb::testThat]
biodb.INFO [2025-08-27 21:01:35.720][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-08-27 21:01:35.721][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:35.722][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:35.729][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-08-27 21:01:35.730][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-08-27 21:01:35.731][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-27 21:01:35.733][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.734][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-27 21:01:35.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-08-27 21:01:35.737][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-27 21:01:35.739][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-27 21:01:35.745][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-27 21:01:35.746][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.748][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:01:35.749][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:01:35.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:35.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:35.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:35.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:35.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:35.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:35.793][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-08-27 21:01:35.794][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-08-27 21:01:35.795][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-08-27 21:01:35.807][biodb::testThat]
biodb.INFO [2025-08-27 21:01:35.808][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-08-27 21:01:35.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:35.810][biodb::testThat]
biodb.INFO [2025-08-27 21:01:35.830][biodb::testThat]
biodb.INFO [2025-08-27 21:01:35.831][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-08-27 21:01:35.832][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:35.833][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:35.836][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.837][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.839][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:01:35.840][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.841][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:01:35.842][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:01:35.843][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:01:35.844][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:01:35.845][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-08-27 21:01:35.858][biodb::testThat]
biodb.INFO [2025-08-27 21:01:35.859][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-08-27 21:01:35.860][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:35.861][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:35.863][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.865][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.866][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:01:35.868][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:35.869][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:01:35.870][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:01:35.871][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:01:35.872][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:01:35.873][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-08-27 21:01:35.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:35.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:35.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.885][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:35.886][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:35.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:35.889][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:35.890][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:35.892][ef$get] fields variable is a list.
biodb.INFO [2025-08-27 21:01:35.893][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-27 21:01:35.894][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-08-27 21:01:35.902][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-08-27 21:01:35.903][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-27 21:01:35.904][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:35.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:35.906][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:35.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:35.908][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-27 21:01:35.912][biodb::testContext]
biodb.INFO [2025-08-27 21:01:35.913][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:01:35.914][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-08-27 21:01:35.915][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:01:35.916][biodb::testContext]
biodb.INFO [2025-08-27 21:01:35.920][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-27 21:01:35.922][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-27 21:01:35.926][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:01:35.927][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-27 21:01:35.928][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-27 21:01:35.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.931][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-27 21:01:35.933][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-27 21:01:35.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.936][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-27 21:01:35.937][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-27 21:01:35.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.941][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-27 21:01:35.942][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-27 21:01:35.943][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-27 21:01:35.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.947][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-27 21:01:35.948][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-27 21:01:35.949][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-27 21:01:35.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.952][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-27 21:01:35.953][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-27 21:01:35.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.957][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-27 21:01:35.958][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-27 21:01:35.959][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-27 21:01:35.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.963][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-27 21:01:35.968][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-27 21:01:35.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.972][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-27 21:01:35.973][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-27 21:01:35.974][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-27 21:01:35.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.978][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-27 21:01:35.979][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-27 21:01:35.980][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-27 21:01:35.981][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-27 21:01:35.982][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-27 21:01:35.983][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-27 21:01:35.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.986][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-27 21:01:35.987][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-27 21:01:35.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.991][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-27 21:01:35.992][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-27 21:01:35.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:35.996][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-27 21:01:35.997][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-27 21:01:35.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:35.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:35.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.000][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-27 21:01:36.001][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-27 21:01:36.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.005][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-27 21:01:36.006][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-27 21:01:36.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.010][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-27 21:01:36.011][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-27 21:01:36.014][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-27 21:01:36.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.018][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-27 21:01:36.019][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-27 21:01:36.020][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-27 21:01:36.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.024][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-27 21:01:36.026][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.027][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-27 21:01:36.028][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.029][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:36.030][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.031][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.032][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.033][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.034][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-27 21:01:36.035][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:36.036][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.037][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-27 21:01:36.038][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:36.039][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.040][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.041][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:01:36.041][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-27 21:01:36.041][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-27 21:01:36.041][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-27 21:01:36.041][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-27 21:01:36.042][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:36.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.045][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:36.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.047][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.048][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.049][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:36.050][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:36.051][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.052][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.053][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-27 21:01:36.055][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.056][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-27 21:01:36.057][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.058][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:36.059][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.060][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.061][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.062][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.063][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-27 21:01:36.064][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:36.065][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.066][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-27 21:01:36.067][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:36.068][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.069][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.070][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:01:36.070][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-27 21:01:36.070][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-27 21:01:36.070][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-27 21:01:36.070][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-27 21:01:36.071][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:36.072][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.078][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.079][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:36.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.082][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.083][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.084][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:36.084][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:36.085][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.086][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.087][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-27 21:01:36.089][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.090][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-27 21:01:36.091][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:36.093][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.094][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.095][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.096][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.097][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-27 21:01:36.098][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:36.099][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.100][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-27 21:01:36.101][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:36.102][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.103][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.104][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.105][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:36.106][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.108][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:36.109][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.110][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.111][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.112][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.113][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:36.114][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:36.115][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.116][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.117][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-27 21:01:36.119][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.120][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-27 21:01:36.121][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.122][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:36.123][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.124][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.125][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.126][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.127][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-27 21:01:36.128][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:36.129][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.130][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-27 21:01:36.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:36.132][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.133][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.134][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.135][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:36.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:36.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.140][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.141][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.142][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:36.143][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:36.144][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.145][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.146][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:01:36.147][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.229][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-27 21:01:36.231][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-27 21:01:36.232][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-27 21:01:36.233][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-27 21:01:36.235][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-27 21:01:36.236][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-27 21:01:36.238][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-27 21:01:36.239][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-27 21:01:36.240][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-27 21:01:36.242][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-27 21:01:36.243][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-27 21:01:36.245][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-27 21:01:36.246][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-27 21:01:36.247][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-27 21:01:36.249][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-27 21:01:36.250][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-27 21:01:36.251][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-27 21:01:36.253][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-27 21:01:36.254][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-27 21:01:36.256][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-27 21:01:36.257][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-27 21:01:36.258][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-27 21:01:36.260][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-27 21:01:36.261][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-27 21:01:36.263][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-27 21:01:36.264][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-27 21:01:36.265][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-27 21:01:36.267][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-27 21:01:36.268][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-27 21:01:36.270][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-27 21:01:36.271][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-27 21:01:36.272][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-27 21:01:36.274][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-27 21:01:36.275][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-27 21:01:36.276][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-27 21:01:36.278][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-27 21:01:36.279][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-27 21:01:36.280][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-27 21:01:36.282][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-27 21:01:36.288][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-27 21:01:36.290][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-27 21:01:36.291][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-27 21:01:36.292][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-27 21:01:36.294][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-27 21:01:36.295][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-27 21:01:36.296][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-27 21:01:36.298][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-27 21:01:36.299][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-27 21:01:36.300][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-27 21:01:36.302][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-27 21:01:36.303][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-27 21:01:36.304][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-27 21:01:36.306][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-27 21:01:36.307][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-27 21:01:36.309][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-27 21:01:36.310][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-27 21:01:36.311][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-27 21:01:36.313][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-27 21:01:36.314][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-27 21:01:36.316][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-27 21:01:36.317][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-27 21:01:36.318][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-27 21:01:36.320][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-27 21:01:36.321][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-27 21:01:36.322][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-27 21:01:36.324][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-27 21:01:36.325][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-27 21:01:36.326][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-27 21:01:36.328][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-27 21:01:36.329][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-27 21:01:36.331][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-27 21:01:36.332][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-27 21:01:36.333][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-27 21:01:36.335][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-27 21:01:36.336][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-27 21:01:36.337][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-27 21:01:36.339][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-27 21:01:36.340][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-27 21:01:36.342][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-27 21:01:36.343][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-27 21:01:36.344][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-27 21:01:36.346][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-27 21:01:36.347][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-27 21:01:36.349][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-27 21:01:36.350][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-27 21:01:36.357][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:01:36.358][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.361][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:36.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:36.504][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-08-27 21:01:36.506][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:36.508][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.509][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.510][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.511][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:36.512][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.513][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-08-27 21:01:36.514][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.515][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.516][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-27 21:01:36.517][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:36.518][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.519][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-08-27 21:01:36.520][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-08-27 21:01:36.521][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-08-27 21:01:36.523][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:36.524][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:01:36.524][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-08-27 21:01:36.524][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-08-27 21:01:36.525][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-27 21:01:36.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.527][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.528][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:36.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:36.534][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:36.535][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:36.536][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-27 21:01:36.536][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-08-27 21:01:36.537][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:36.538][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:36.539][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:36.540][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:36.541][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-08-27 21:01:36.543][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-27 21:01:36.545][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-27 21:01:36.546][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-27 21:01:36.548][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-27 21:01:36.551][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:36.552][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-08-27 21:01:36.553][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:36.555][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:01:36.556][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:36.557][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:36.558][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-08-27 21:01:36.559][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-08-27 21:01:36.560][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-27 21:01:36.560][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-08-27 21:01:36.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:36.562][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:36.563][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-08-27 21:01:36.564][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-08-27 21:01:36.565][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:36.567][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:01:36.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:36.569][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:36.570][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:01:36.571][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:36.572][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-08-27 21:01:36.574][biodb::testThat]
biodb.INFO [2025-08-27 21:01:36.575][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-08-27 21:01:36.576][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:36.577][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:36.581][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:36.582][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:36.584][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:01:36.585][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:36.586][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:01:36.587][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:01:36.588][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:01:36.589][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:01:36.590][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:01:36.593][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-08-27 21:01:36.599][biodb::testThat]
biodb.INFO [2025-08-27 21:01:36.600][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-08-27 21:01:36.601][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:36.602][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:36.604][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-08-27 21:01:36.605][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-27 21:01:36.606][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:36.608][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-27 21:01:36.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-08-27 21:01:36.611][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-27 21:01:36.613][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-08-27 21:01:36.614][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-27 21:01:36.615][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:01:36.617][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:01:36.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:36.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:36.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:36.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:36.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:36.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:36.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:36.633][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:36.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:36.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.641][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.643][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.656][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.657][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.664][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.665][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.681][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.682][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.707][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.708][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.715][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.717][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.724][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:36.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:36.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:36.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:36.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.749][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:36.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:36.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.770][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:36.771][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:36.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:36.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:36.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.787][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:01:36.788][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:01:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:36.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:36.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:36.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:36.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:36.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:37.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:37.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:01:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:01:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:37.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:37.100][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-08-27 21:01:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-27 21:01:37.118][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-27 21:01:37.119][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-08-27 21:01:37.120][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-08-27 21:01:37.121][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-27 21:01:37.122][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.124][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.126][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-27 21:01:37.130][biodb::testContext]
biodb.INFO [2025-08-27 21:01:37.131][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:01:37.132][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-08-27 21:01:37.133][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-27 21:01:37.134][biodb::testContext]
biodb.INFO [2025-08-27 21:01:37.138][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-27 21:01:37.139][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-27 21:01:37.143][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:01:37.144][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-27 21:01:37.145][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-27 21:01:37.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.149][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-27 21:01:37.150][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-27 21:01:37.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.154][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-27 21:01:37.155][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-27 21:01:37.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.159][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-27 21:01:37.160][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-27 21:01:37.161][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-27 21:01:37.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.164][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-27 21:01:37.165][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-27 21:01:37.166][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-27 21:01:37.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.170][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-27 21:01:37.171][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-27 21:01:37.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.174][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-27 21:01:37.175][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-27 21:01:37.176][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-27 21:01:37.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.185][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-27 21:01:37.186][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-27 21:01:37.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.190][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-27 21:01:37.191][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-27 21:01:37.192][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-27 21:01:37.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.196][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-27 21:01:37.197][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-27 21:01:37.198][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-27 21:01:37.199][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-27 21:01:37.200][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-27 21:01:37.201][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-27 21:01:37.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.204][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-27 21:01:37.205][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-27 21:01:37.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.209][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-27 21:01:37.210][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-27 21:01:37.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.214][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-27 21:01:37.215][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-27 21:01:37.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.218][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-27 21:01:37.219][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-27 21:01:37.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.223][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-27 21:01:37.224][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-27 21:01:37.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.228][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-27 21:01:37.229][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-27 21:01:37.233][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-27 21:01:37.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.237][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-27 21:01:37.238][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-27 21:01:37.239][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-27 21:01:37.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.243][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-27 21:01:37.245][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.246][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-27 21:01:37.247][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.248][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:37.249][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.250][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.251][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.252][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.253][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-27 21:01:37.254][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:37.255][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.256][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-27 21:01:37.257][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:37.258][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.259][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.260][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:01:37.260][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-27 21:01:37.260][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-27 21:01:37.260][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-27 21:01:37.260][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-27 21:01:37.261][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:37.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.264][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:37.265][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.266][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.267][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.268][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.269][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:37.270][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:37.270][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.271][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.273][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-27 21:01:37.274][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.275][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-27 21:01:37.276][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.277][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:37.278][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.279][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.281][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.282][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.283][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-27 21:01:37.284][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:37.285][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.290][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-27 21:01:37.291][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:37.292][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.293][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.295][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:01:37.295][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-27 21:01:37.295][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-27 21:01:37.295][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-27 21:01:37.295][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-27 21:01:37.296][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:37.297][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.298][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.298][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:37.299][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.300][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.301][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.302][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.303][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:37.304][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:37.305][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.306][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.307][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-27 21:01:37.309][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.310][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-27 21:01:37.311][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.312][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:37.313][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.314][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.315][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.316][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.317][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-27 21:01:37.318][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:37.319][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.320][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-27 21:01:37.321][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:37.322][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.323][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.324][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:37.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.328][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:37.329][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.330][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.331][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.332][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.333][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:37.334][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:37.335][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.336][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.337][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-27 21:01:37.339][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.340][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-27 21:01:37.341][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.342][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:37.343][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.344][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.345][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.346][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.347][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-27 21:01:37.348][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:37.349][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.350][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-27 21:01:37.351][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:37.352][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.353][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.354][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.355][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-27 21:01:37.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.358][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:37.359][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.360][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.361][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.362][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.363][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:37.363][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:37.364][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.365][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.367][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:01:37.368][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.450][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-27 21:01:37.452][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-27 21:01:37.453][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-27 21:01:37.454][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-27 21:01:37.456][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-27 21:01:37.457][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-27 21:01:37.459][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-27 21:01:37.460][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-27 21:01:37.461][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-27 21:01:37.463][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-27 21:01:37.464][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-27 21:01:37.465][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-27 21:01:37.467][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-27 21:01:37.468][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-27 21:01:37.469][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-27 21:01:37.471][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-27 21:01:37.472][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-27 21:01:37.473][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-27 21:01:37.475][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-27 21:01:37.476][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-27 21:01:37.478][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-27 21:01:37.479][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-27 21:01:37.480][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-27 21:01:37.482][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-27 21:01:37.483][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-27 21:01:37.484][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-27 21:01:37.486][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-27 21:01:37.487][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-27 21:01:37.489][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-27 21:01:37.494][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-27 21:01:37.496][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-27 21:01:37.497][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-27 21:01:37.498][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-27 21:01:37.500][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-27 21:01:37.501][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-27 21:01:37.502][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-27 21:01:37.504][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-27 21:01:37.505][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-27 21:01:37.506][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-27 21:01:37.508][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-27 21:01:37.509][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-27 21:01:37.510][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-27 21:01:37.512][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-27 21:01:37.513][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-27 21:01:37.514][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-27 21:01:37.516][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-27 21:01:37.517][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-27 21:01:37.519][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-27 21:01:37.520][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-27 21:01:37.521][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-27 21:01:37.523][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-27 21:01:37.524][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-27 21:01:37.525][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-27 21:01:37.527][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-27 21:01:37.528][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-27 21:01:37.529][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-27 21:01:37.531][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-27 21:01:37.532][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-27 21:01:37.534][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-27 21:01:37.535][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-27 21:01:37.536][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-27 21:01:37.538][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-27 21:01:37.539][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-27 21:01:37.540][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-27 21:01:37.542][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-27 21:01:37.543][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-27 21:01:37.544][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-27 21:01:37.546][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-27 21:01:37.547][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-27 21:01:37.549][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-27 21:01:37.550][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-27 21:01:37.551][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-27 21:01:37.553][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-27 21:01:37.554][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-27 21:01:37.555][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-27 21:01:37.557][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-27 21:01:37.558][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-27 21:01:37.560][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-27 21:01:37.561][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-27 21:01:37.562][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-27 21:01:37.564][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-27 21:01:37.565][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-27 21:01:37.567][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-27 21:01:37.568][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-27 21:01:37.570][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-27 21:01:37.571][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-27 21:01:37.572][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.573][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-27 21:01:37.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:37.690][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-08-27 21:01:37.691][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:37.698][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.699][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.700][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.701][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-27 21:01:37.702][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.703][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-08-27 21:01:37.704][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.705][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.706][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-27 21:01:37.707][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-27 21:01:37.708][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.709][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-08-27 21:01:37.710][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-08-27 21:01:37.711][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-08-27 21:01:37.712][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-27 21:01:37.713][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-27 21:01:37.713][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-08-27 21:01:37.713][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-08-27 21:01:37.714][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-27 21:01:37.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.717][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-27 21:01:37.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-27 21:01:37.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-27 21:01:37.720][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-27 21:01:37.721][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-27 21:01:37.721][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-08-27 21:01:37.722][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:37.723][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:37.724][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-27 21:01:37.725][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-27 21:01:37.726][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-08-27 21:01:37.728][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-27 21:01:37.729][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-27 21:01:37.731][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-27 21:01:37.733][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-27 21:01:37.736][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:37.737][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-08-27 21:01:37.738][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:37.740][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:01:37.741][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:37.742][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:37.743][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-08-27 21:01:37.744][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-08-27 21:01:37.745][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-27 21:01:37.745][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-08-27 21:01:37.746][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-27 21:01:37.747][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-27 21:01:37.748][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-08-27 21:01:37.749][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-08-27 21:01:37.750][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-27 21:01:37.752][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:01:37.753][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:37.754][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:37.756][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-27 21:01:37.757][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-27 21:01:37.758][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-08-27 21:01:37.759][biodb::testThat]
biodb.INFO [2025-08-27 21:01:37.760][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-08-27 21:01:37.761][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-27 21:01:37.762][biodb::testThat]
biodb.DEBUG[2025-08-27 21:01:37.764][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-27 21:01:37.765][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-08-27 21:01:37.766][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-08-27 21:01:37.769][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:37.770][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:37.772][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:01:37.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:37.774][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:01:37.775][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:01:37.776][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:01:37.777][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:01:37.778][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:01:37.780][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:01:37.780][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-08-27 21:01:37.782][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-08-27 21:01:37.783][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-27 21:01:37.785][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:37.786][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-27 21:01:37.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-08-27 21:01:37.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-27 21:01:37.791][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-08-27 21:01:37.792][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-27 21:01:37.794][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:01:37.795][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:01:37.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:37.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:37.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:37.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:37.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:37.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:37.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:37.814][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.823][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:37.824][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:37.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.831][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:37.833][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:37.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:37.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:37.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.840][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:37.841][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:37.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:37.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.857][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:37.858][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:37.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:37.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:37.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:37.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:37.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:37.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:37.884][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:37.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.892][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:37.893][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:37.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:37.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:37.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:37.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:37.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:37.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:37.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:37.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.947][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.956][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:37.957][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:37.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:37.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:37.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:37.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:37.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.974][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:01:37.975][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:37.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.978][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:01:37.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.088][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.193][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:01:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:01:38.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:38.304][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-08-27 21:01:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:38.321][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:01:38.322][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:01:38.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:38.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:38.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:38.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:38.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:38.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:38.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:38.333][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-08-27 21:01:38.334][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-27 21:01:38.336][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:38.337][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-27 21:01:38.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-08-27 21:01:38.341][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-27 21:01:38.342][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-08-27 21:01:38.343][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-27 21:01:38.344][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-27 21:01:38.346][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-27 21:01:38.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:38.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:38.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:38.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:38.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:38.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:38.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:38.365][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.374][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.375][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.378][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.382][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.383][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.390][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.391][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.407][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.408][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.416][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.433][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.434][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.441][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.442][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.464][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.465][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.517][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.526][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.527][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.545][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:01:38.546][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-27 21:01:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-27 21:01:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-27 21:01:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-27 21:01:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-27 21:01:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-27 21:01:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-27 21:01:38.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-27 21:01:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.661][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-27 21:01:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-27 21:01:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-27 21:01:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-27 21:01:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-27 21:01:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-27 21:01:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-27 21:01:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-27 21:01:38.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-27 21:01:38.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-27 21:01:38.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.782][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:01:38.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-27 21:01:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-27 21:01:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-27 21:01:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-27 21:01:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-27 21:01:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-27 21:01:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-27 21:01:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:38.871][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-08-27 21:01:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:38.888][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:01:38.889][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:01:38.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:38.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:38.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:38.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:38.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:38.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:38.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:38.937][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-27 21:01:38.938][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-08-27 21:01:38.939][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-08-27 21:01:38.941][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:38.943][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:38.944][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:01:38.946][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:38.946][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:01:38.948][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:01:38.949][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:01:38.950][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:01:38.951][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:01:38.952][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:01:38.953][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-27 21:01:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.971][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:38.984][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:01:38.985][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:01:38.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:38.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:38.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:38.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:38.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:38.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:38.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:39.027][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-08-27 21:01:39.028][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:01:39.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:39.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:39.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:39.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:39.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:39.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:39.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-27 21:01:39.048][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-27 21:01:39.050][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-08-27 21:01:39.051][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-08-27 21:01:39.053][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:39.054][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:39.056][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-27 21:01:39.057][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-27 21:01:39.058][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-27 21:01:39.059][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-27 21:01:39.060][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-27 21:01:39.061][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-27 21:01:39.062][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-27 21:01:39.063][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-27 21:01:39.064][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-27 21:01:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:39.096][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-08-27 21:01:39.097][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-08-27 21:01:39.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:39.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:39.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:39.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:39.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:39.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:39.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-27 21:01:39.109][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.130][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-27 21:01:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-27 21:01:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-27 21:01:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-27 21:01:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-27 21:01:39.138][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-27 21:01:39.139][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-27 21:01:39.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-27 21:01:39.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:39.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:39.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:39.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:39.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:39.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-27 21:01:39.161][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-27 21:01:39.163][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-08-27 21:01:39.164][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-08-27 21:01:39.165][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-27 21:01:39.166][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-27 21:01:39.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-27 21:01:39.168][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-27 21:01:39.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-27 21:01:39.170][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-27 21:01:39.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  8.737   0.476  48.576 

Example timings