Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4824
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4604
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4545
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on merida1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz

StartedAt: 2025-08-26 00:31:56 -0400 (Tue, 26 Aug 2025)

EndedAt: 2025-08-26 00:33:26 -0400 (Tue, 26 Aug 2025)

EllapsedTime: 90.7 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.1 RC (2025-06-05 r88288)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-08-26 00:32:56.972][biodb::testContext]
biodb.INFO [2025-08-26 00:32:56.978][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:32:56.981][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-08-26 00:32:56.983][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:32:56.985][biodb::testContext]
biodb.INFO [2025-08-26 00:32:56.989][biodb::testThat]
biodb.INFO [2025-08-26 00:32:56.992][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-08-26 00:32:56.994][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:32:56.997][biodb::testThat]
biodb.INFO [2025-08-26 00:32:57.271][biodb::testContext]
biodb.INFO [2025-08-26 00:32:57.274][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:32:57.276][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-08-26 00:32:57.279][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:32:57.281][biodb::testContext]
biodb.INFO [2025-08-26 00:32:57.297][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-26 00:32:57.301][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-26 00:32:57.315][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:32:57.318][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-26 00:32:57.320][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-26 00:32:57.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.328][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-26 00:32:57.384][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-26 00:32:57.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.393][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-26 00:32:57.396][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-26 00:32:57.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.404][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-26 00:32:57.407][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-26 00:32:57.409][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-26 00:32:57.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.418][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-26 00:32:57.421][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-26 00:32:57.424][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-26 00:32:57.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.434][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-26 00:32:57.437][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-26 00:32:57.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.446][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-26 00:32:57.448][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-26 00:32:57.451][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-26 00:32:57.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.461][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-26 00:32:57.463][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-26 00:32:57.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.473][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-26 00:32:57.476][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-26 00:32:57.479][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-26 00:32:57.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.487][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-26 00:32:57.490][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-26 00:32:57.492][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-26 00:32:57.495][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-26 00:32:57.498][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-26 00:32:57.500][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-26 00:32:57.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.510][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-26 00:32:57.513][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-26 00:32:57.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.522][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-26 00:32:57.524][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-26 00:32:57.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.533][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-26 00:32:57.535][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-26 00:32:57.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.544][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-26 00:32:57.546][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-26 00:32:57.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.555][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-26 00:32:57.558][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-26 00:32:57.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.566][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-26 00:32:57.568][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-26 00:32:57.586][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-26 00:32:57.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.595][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-26 00:32:57.597][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-26 00:32:57.600][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-26 00:32:57.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:57.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:57.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:57.613][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-26 00:32:57.698][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.739][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-26 00:32:57.741][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.743][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:32:57.746][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.748][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.750][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.752][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.754][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-26 00:32:57.757][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:32:57.759][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.761][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-26 00:32:57.763][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:32:57.765][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.767][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.769][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:32:57.769][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-26 00:32:57.769][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-26 00:32:57.769][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-26 00:32:57.769][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-26 00:32:57.771][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:32:57.773][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.775][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.777][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:32:57.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.788][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.790][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.792][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.794][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:32:57.796][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:32:57.798][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.800][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.803][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-26 00:32:57.807][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.810][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-26 00:32:57.812][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.815][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:32:57.817][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.819][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.821][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.824][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.826][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-26 00:32:57.828][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:32:57.830][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.832][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-26 00:32:57.835][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:32:57.837][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.840][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.842][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:32:57.842][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-26 00:32:57.842][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-26 00:32:57.842][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-26 00:32:57.842][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-26 00:32:57.844][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:32:57.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.849][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.851][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:32:57.853][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.857][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.859][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:32:57.864][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:32:57.866][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.868][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.871][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-26 00:32:57.875][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.877][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-26 00:32:57.879][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.882][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:32:57.884][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.886][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.888][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.890][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.893][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-26 00:32:57.895][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:32:57.897][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.900][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-26 00:32:57.902][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:32:57.904][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.906][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.909][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.911][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:32:57.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.917][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:32:57.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.922][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.924][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.927][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:32:57.929][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:32:57.931][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.933][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.936][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-26 00:32:57.940][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.942][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-26 00:32:57.944][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:32:57.948][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.950][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.953][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.955][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.957][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-26 00:32:57.959][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:32:57.962][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:57.964][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-26 00:32:57.966][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:32:57.969][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.971][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:57.973][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.976][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:32:57.978][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.980][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.983][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:32:57.985][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:57.987][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:57.989][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:32:57.992][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:57.994][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:32:57.996][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:32:57.998][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:58.000][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:58.008][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:32:58.010][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.201][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-26 00:32:58.210][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-26 00:32:58.213][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-26 00:32:58.216][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-26 00:32:58.219][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-26 00:32:58.222][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-26 00:32:58.225][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-26 00:32:58.228][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-26 00:32:58.231][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-26 00:32:58.234][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-26 00:32:58.237][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-26 00:32:58.241][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-26 00:32:58.244][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-26 00:32:58.247][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-26 00:32:58.251][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-26 00:32:58.254][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-26 00:32:58.257][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-26 00:32:58.260][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-26 00:32:58.263][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-26 00:32:58.266][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-26 00:32:58.269][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-26 00:32:58.273][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-26 00:32:58.276][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-26 00:32:58.280][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-26 00:32:58.283][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-26 00:32:58.286][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-26 00:32:58.290][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-26 00:32:58.293][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-26 00:32:58.297][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-26 00:32:58.300][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-26 00:32:58.304][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-26 00:32:58.307][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-26 00:32:58.311][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-26 00:32:58.314][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-26 00:32:58.318][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-26 00:32:58.321][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-26 00:32:58.324][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-26 00:32:58.328][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-26 00:32:58.331][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-26 00:32:58.335][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-26 00:32:58.338][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-26 00:32:58.342][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-26 00:32:58.345][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-26 00:32:58.349][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-26 00:32:58.352][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-26 00:32:58.355][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-26 00:32:58.359][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-26 00:32:58.362][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-26 00:32:58.366][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-26 00:32:58.369][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-26 00:32:58.373][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-26 00:32:58.376][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-26 00:32:58.379][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-26 00:32:58.383][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-26 00:32:58.386][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-26 00:32:58.388][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-26 00:32:58.392][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-26 00:32:58.395][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-26 00:32:58.398][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-26 00:32:58.402][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-26 00:32:58.405][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-26 00:32:58.408][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-26 00:32:58.411][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-26 00:32:58.414][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-26 00:32:58.417][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-26 00:32:58.420][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-26 00:32:58.423][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-26 00:32:58.427][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-26 00:32:58.430][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-26 00:32:58.433][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-26 00:32:58.437][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-26 00:32:58.440][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-26 00:32:58.443][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-26 00:32:58.446][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-26 00:32:58.449][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-26 00:32:58.453][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-26 00:32:58.456][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-26 00:32:58.460][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-26 00:32:58.463][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-26 00:32:58.466][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-26 00:32:58.469][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-26 00:32:58.472][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-26 00:32:58.476][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-26 00:32:58.491][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-26 00:32:58.494][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-26 00:32:58.500][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:32:58.502][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.506][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:32:58.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:58.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:58.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:58.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:58.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:58.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:32:58.820][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-08-26 00:32:58.845][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:32:58.849][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:58.851][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-26 00:32:58.854][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:58.856][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:32:58.859][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:58.861][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-08-26 00:32:58.864][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:58.866][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:32:58.868][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-26 00:32:58.871][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:32:58.874][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:58.876][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-08-26 00:32:58.879][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-08-26 00:32:58.881][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-08-26 00:32:58.885][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-26 00:32:58.887][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:32:58.887][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-08-26 00:32:58.887][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-08-26 00:32:58.890][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-26 00:32:58.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:58.895][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:58.897][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:32:58.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:32:58.902][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:32:58.904][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:32:58.907][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-26 00:32:58.907][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-08-26 00:32:58.909][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:32:58.911][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:32:58.914][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-26 00:32:58.916][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:32:58.932][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-08-26 00:32:58.935][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-26 00:32:58.939][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-26 00:32:58.943][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-26 00:32:58.947][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-26 00:32:58.990][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:32:58.992][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-08-26 00:32:59.000][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:32:59.009][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:32:59.018][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:32:59.021][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:32:59.024][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-08-26 00:32:59.027][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-08-26 00:32:59.030][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-26 00:32:59.030][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-08-26 00:32:59.032][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:32:59.035][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:32:59.037][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-08-26 00:32:59.040][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-08-26 00:32:59.043][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:32:59.102][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:32:59.105][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:32:59.108][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:32:59.112][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:32:59.115][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:32:59.118][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-08-26 00:32:59.134][biodb::testThat]
biodb.INFO [2025-08-26 00:32:59.137][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-26 00:32:59.140][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:32:59.142][biodb::testThat]
biodb.TRACE[2025-08-26 00:32:59.178][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-08-26 00:32:59.182][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:32:59.189][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:32:59.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:32:59.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:32:59.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:32:59.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:32:59.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:32:59.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:32:59.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:32:59.249][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:32:59.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:32:59.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:32:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:32:59.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.302][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:32:59.306][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:32:59.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:32:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:32:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.391][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.394][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.411][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.414][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.421][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.449][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.451][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:32:59.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:32:59.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:32:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:32:59.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:32:59.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:32:59.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:32:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:32:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.542][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.545][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.566][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:32:59.568][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:32:59.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:32:59.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:32:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:32:59.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:32:59.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:32:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:32:59.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:32:59.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:32:59.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:32:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:32:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:32:59.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:32:59.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:32:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:32:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:32:59.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:32:59.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:32:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:32:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:32:59.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:32:59.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:32:59.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:32:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.687][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:32:59.690][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:32:59.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:32:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:32:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:32:59.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:32:59.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:32:59.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:32:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.725][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:32:59.727][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:32:59.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:32:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:32:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:32:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:32:59.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:32:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:32:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:32:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:32:59.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.887][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:32:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:32:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:32:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:32:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:32:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:32:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:32:59.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:00.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:00.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:00.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:00.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:00.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:00.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:00.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:00.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:00.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:00.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:00.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:00.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:00.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:00.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.201][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:00.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:00.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:00.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:00.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:00.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:00.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:00.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.358][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:00.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.395][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:00.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:00.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:00.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.501][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.520][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:00.613][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-08-26 00:33:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-26 00:33:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-26 00:33:00.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-26 00:33:00.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-26 00:33:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-26 00:33:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-26 00:33:00.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-26 00:33:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-26 00:33:00.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.717][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.805][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.814][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:00.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.912][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.922][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.932][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.942][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.945][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:00.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:00.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:00.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:00.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:00.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:01.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:01.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.009][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:01.012][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:01.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:01.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:01.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:01.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:01.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:01.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:01.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:01.287][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:01.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:01.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:01.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.352][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:01.355][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:01.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:01.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:01.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.463][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.483][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.486][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:01.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:01.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.650][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.652][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.730][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.732][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.802][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:01.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:01.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:01.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:01.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:01.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:01.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:01.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:01.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.048][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.077][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.079][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.112][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:02.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:02.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.131][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:02.134][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:02.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.150][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.153][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:02.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:02.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.190][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:02.193][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:02.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.210][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:02.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:02.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.230][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:02.234][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:02.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.250][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:02.252][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:02.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.272][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:02.275][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:02.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.291][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:02.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:02.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:02.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:02.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:02.358][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:02.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:02.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:02.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.394][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:02.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:02.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:02.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:02.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.431][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:02.434][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:02.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:02.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:02.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.458][ef$get] fields variable is a list.
biodb.INFO [2025-08-26 00:33:02.477][biodb::testThat]
biodb.INFO [2025-08-26 00:33:02.479][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-26 00:33:02.482][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:02.484][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:02.520][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-08-26 00:33:02.533][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-26 00:33:02.542][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:02.546][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-26 00:33:02.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-08-26 00:33:02.554][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-26 00:33:02.558][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-08-26 00:33:02.561][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-26 00:33:02.624][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:33:02.627][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:33:02.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:02.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:02.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:02.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:02.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:02.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:02.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:02.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:02.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:02.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:02.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:02.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.693][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:02.696][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:02.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.703][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.714][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:02.717][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:02.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:02.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.734][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.736][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:02.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:02.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:02.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.773][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:02.776][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:02.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:02.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:02.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:02.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:02.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:02.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.834][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:02.836][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:02.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:02.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.853][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:02.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:02.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.876][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:02.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:02.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:02.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:02.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:02.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:02.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:02.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.975][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:02.977][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:02.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:02.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:02.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:02.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:03.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.024][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:03.026][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:03.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.094][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:03.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:03.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:03.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:03.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:03.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:03.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:03.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:03.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:03.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:03.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:03.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:03.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:03.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:03.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.301][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:03.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:03.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:03.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:03.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:03.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:03.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:03.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:03.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.664][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:03.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:03.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:03.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.757][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:03.823][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-08-26 00:33:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-26 00:33:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-26 00:33:03.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-26 00:33:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-26 00:33:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-26 00:33:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-26 00:33:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-26 00:33:03.873][biodb::testThat]
biodb.INFO [2025-08-26 00:33:03.875][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-26 00:33:03.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:03.881][biodb::testThat]
biodb.TRACE[2025-08-26 00:33:03.888][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.896][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:03.899][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-08-26 00:33:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.007][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-08-26 00:33:04.010][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-08-26 00:33:04.014][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-26 00:33:04.016][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-26 00:33:04.020][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.035][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:04.040][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.043][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:04.047][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:04.050][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:04.053][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:04.056][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:04.058][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:04.061][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-26 00:33:04.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.116][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:04.118][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:04.121][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-08-26 00:33:04.152][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.154][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.159][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.163][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-08-26 00:33:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.234][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-08-26 00:33:04.385][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-26 00:33:04.388][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-08-26 00:33:04.391][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-08-26 00:33:04.442][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.445][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.449][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:04.453][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.455][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:04.496][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:04.499][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:04.501][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:04.504][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:04.506][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:04.509][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-26 00:33:04.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:04.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:04.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.556][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:04.559][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:04.561][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-08-26 00:33:04.591][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.595][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.601][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.604][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-08-26 00:33:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.665][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.682][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-08-26 00:33:04.686][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-08-26 00:33:04.688][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-08-26 00:33:04.691][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-08-26 00:33:04.695][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.699][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.703][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:04.706][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.709][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:04.712][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:04.715][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:04.718][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:04.720][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:04.723][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:04.726][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-26 00:33:04.730][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.756][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:04.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.777][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:04.788][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:04.790][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-08-26 00:33:04.826][biodb::testThat]
biodb.INFO [2025-08-26 00:33:04.828][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-26 00:33:04.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:04.833][biodb::testThat]
biodb.TRACE[2025-08-26 00:33:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:04.913][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-08-26 00:33:04.916][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-26 00:33:04.919][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-08-26 00:33:04.923][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.926][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.930][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:04.933][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:04.936][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:04.940][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:04.943][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:04.945][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:04.948][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:04.951][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:04.953][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-26 00:33:04.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:04.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:05.000][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:05.004][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-08-26 00:33:05.046][biodb::testThat]
biodb.INFO [2025-08-26 00:33:05.049][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-26 00:33:05.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:05.054][biodb::testThat]
biodb.TRACE[2025-08-26 00:33:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-26 00:33:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-26 00:33:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-26 00:33:05.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-26 00:33:05.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-26 00:33:05.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-26 00:33:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-26 00:33:05.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:05.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-26 00:33:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-26 00:33:05.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:05.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-26 00:33:05.346][biodb::testThat]
biodb.INFO [2025-08-26 00:33:05.350][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-26 00:33:05.352][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:05.354][biodb::testThat]
biodb.INFO [2025-08-26 00:33:05.374][biodb::testThat]
biodb.INFO [2025-08-26 00:33:05.376][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-26 00:33:05.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:05.381][biodb::testThat]
biodb.INFO [2025-08-26 00:33:05.402][biodb::testThat]
biodb.INFO [2025-08-26 00:33:05.404][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-26 00:33:05.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:05.409][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:05.421][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-08-26 00:33:07.325][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-08-26 00:33:07.589][biodb::testThat]
biodb.INFO [2025-08-26 00:33:07.591][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-26 00:33:07.593][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:07.595][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:08.834][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-08-26 00:33:09.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:09.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:09.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.089][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:09.092][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:09.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.099][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:09.101][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:09.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.105][ef$get] fields variable is a list.
biodb.INFO [2025-08-26 00:33:09.108][biodb::testThat]
biodb.INFO [2025-08-26 00:33:09.110][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-08-26 00:33:09.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:09.132][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:09.136][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-08-26 00:33:09.257][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-26 00:33:09.262][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.266][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-26 00:33:09.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-08-26 00:33:09.313][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-26 00:33:09.315][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-26 00:33:09.318][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-26 00:33:09.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.324][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:33:09.327][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:33:09.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:09.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:09.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:09.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:09.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:09.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:09.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:09.356][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.400][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:09.467][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-08-26 00:33:09.468][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-08-26 00:33:09.508][biodb::testThat]
biodb.INFO [2025-08-26 00:33:09.510][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-08-26 00:33:09.512][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:09.514][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:09.533][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-08-26 00:33:09.536][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-08-26 00:33:09.538][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-26 00:33:09.542][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.545][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-26 00:33:09.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-08-26 00:33:09.553][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-08-26 00:33:09.555][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-08-26 00:33:09.558][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-26 00:33:09.562][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.564][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:33:09.567][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:33:09.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:09.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:09.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:09.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:09.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:09.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:09.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:09.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:09.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:09.684][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-08-26 00:33:09.686][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-08-26 00:33:09.688][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-08-26 00:33:09.720][biodb::testThat]
biodb.INFO [2025-08-26 00:33:09.722][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-08-26 00:33:09.724][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:09.726][biodb::testThat]
biodb.INFO [2025-08-26 00:33:09.780][biodb::testThat]
biodb.INFO [2025-08-26 00:33:09.782][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-08-26 00:33:09.784][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:09.786][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:09.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.795][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.798][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:09.801][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.803][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:09.806][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:09.809][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:09.812][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:09.815][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-08-26 00:33:09.834][biodb::testThat]
biodb.INFO [2025-08-26 00:33:09.836][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-08-26 00:33:09.839][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:09.841][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:09.847][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.851][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.854][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:09.857][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:09.860][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:09.863][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:09.866][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:09.868][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:09.870][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-08-26 00:33:09.892][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:09.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:09.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.901][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:09.903][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:09.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:09.910][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:09.912][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:09.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:09.917][ef$get] fields variable is a list.
biodb.INFO [2025-08-26 00:33:09.919][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-26 00:33:09.931][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-08-26 00:33:09.952][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-08-26 00:33:09.954][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-26 00:33:09.956][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:09.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:09.960][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:09.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:09.965][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:09.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-26 00:33:09.980][biodb::testContext]
biodb.INFO [2025-08-26 00:33:09.982][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:33:09.984][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-08-26 00:33:09.987][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:33:09.989][biodb::testContext]
biodb.INFO [2025-08-26 00:33:09.999][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-26 00:33:10.002][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-26 00:33:10.010][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:33:10.012][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-26 00:33:10.015][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-26 00:33:10.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.024][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-26 00:33:10.026][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-26 00:33:10.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.051][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-26 00:33:10.054][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-26 00:33:10.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.065][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-26 00:33:10.067][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-26 00:33:10.070][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-26 00:33:10.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.079][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-26 00:33:10.081][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-26 00:33:10.083][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-26 00:33:10.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.092][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-26 00:33:10.095][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-26 00:33:10.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.104][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-26 00:33:10.106][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-26 00:33:10.109][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-26 00:33:10.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.119][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-26 00:33:10.122][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-26 00:33:10.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.131][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-26 00:33:10.134][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-26 00:33:10.136][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-26 00:33:10.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.146][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-26 00:33:10.148][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-26 00:33:10.151][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-26 00:33:10.153][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-26 00:33:10.155][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-26 00:33:10.158][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-26 00:33:10.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.165][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-26 00:33:10.168][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-26 00:33:10.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.176][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-26 00:33:10.178][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-26 00:33:10.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.186][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-26 00:33:10.189][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-26 00:33:10.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.196][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-26 00:33:10.199][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-26 00:33:10.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.216][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-26 00:33:10.219][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-26 00:33:10.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.227][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-26 00:33:10.230][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-26 00:33:10.247][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-26 00:33:10.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.257][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-26 00:33:10.259][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-26 00:33:10.261][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-26 00:33:10.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.270][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-26 00:33:10.274][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.277][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-26 00:33:10.279][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.281][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:10.284][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.286][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.289][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.291][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.293][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-26 00:33:10.295][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:10.297][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.300][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-26 00:33:10.302][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:10.305][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.308][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.310][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:33:10.310][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-26 00:33:10.310][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-26 00:33:10.310][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-26 00:33:10.310][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-26 00:33:10.313][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:10.315][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.320][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:10.322][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.324][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.327][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.329][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.331][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:10.333][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:10.335][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.338][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.341][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-26 00:33:10.345][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.348][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-26 00:33:10.350][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.352][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:10.355][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.357][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.360][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.362][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.365][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-26 00:33:10.368][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:10.370][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.372][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-26 00:33:10.374][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:10.377][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.379][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.381][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:33:10.381][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-26 00:33:10.381][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-26 00:33:10.381][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-26 00:33:10.381][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-26 00:33:10.383][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:10.386][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.390][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:10.392][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.397][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.399][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.402][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:10.404][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:10.406][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.409][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.412][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-26 00:33:10.416][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.418][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-26 00:33:10.421][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:10.426][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.429][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.431][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.434][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.436][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-26 00:33:10.439][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:10.441][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.444][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-26 00:33:10.446][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:10.448][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.451][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.454][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.455][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:10.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.460][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.463][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:10.465][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.467][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.470][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.472][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.475][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:10.476][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:10.487][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.490][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.492][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-26 00:33:10.497][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.499][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-26 00:33:10.502][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.504][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:10.506][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.509][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.511][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.514][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.517][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-26 00:33:10.519][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:10.522][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.524][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-26 00:33:10.527][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:10.529][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.531][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:10.534][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.536][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:10.539][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.541][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.544][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:10.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:10.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:10.551][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:10.554][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:10.559][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:10.561][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:10.564][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:10.567][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:33:10.569][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:10.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:10.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:10.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:10.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:10.767][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-26 00:33:10.771][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-26 00:33:10.774][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-26 00:33:10.778][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-26 00:33:10.781][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-26 00:33:10.785][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-26 00:33:10.788][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-26 00:33:10.792][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-26 00:33:10.795][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-26 00:33:10.798][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-26 00:33:10.801][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-26 00:33:10.804][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-26 00:33:10.808][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-26 00:33:10.811][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-26 00:33:10.815][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-26 00:33:10.818][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-26 00:33:10.821][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-26 00:33:10.825][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-26 00:33:10.828][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-26 00:33:10.832][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-26 00:33:10.836][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-26 00:33:10.839][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-26 00:33:10.842][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-26 00:33:10.846][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-26 00:33:10.849][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-26 00:33:10.852][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-26 00:33:10.855][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-26 00:33:10.858][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-26 00:33:10.862][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-26 00:33:10.866][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-26 00:33:10.869][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-26 00:33:10.873][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-26 00:33:10.876][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-26 00:33:10.880][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-26 00:33:10.883][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-26 00:33:10.886][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-26 00:33:10.890][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-26 00:33:10.893][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-26 00:33:10.897][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-26 00:33:10.901][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-26 00:33:10.904][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-26 00:33:10.908][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-26 00:33:10.912][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-26 00:33:10.916][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-26 00:33:10.920][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-26 00:33:10.924][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-26 00:33:10.927][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-26 00:33:10.930][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-26 00:33:10.933][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-26 00:33:10.936][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-26 00:33:10.939][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-26 00:33:10.942][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-26 00:33:10.945][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-26 00:33:10.948][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-26 00:33:10.952][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-26 00:33:10.955][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-26 00:33:10.958][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-26 00:33:10.961][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-26 00:33:10.964][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-26 00:33:10.967][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-26 00:33:10.971][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-26 00:33:10.974][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-26 00:33:10.978][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-26 00:33:10.981][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-26 00:33:10.985][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-26 00:33:10.988][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-26 00:33:11.001][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-26 00:33:11.004][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-26 00:33:11.008][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-26 00:33:11.011][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-26 00:33:11.015][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-26 00:33:11.018][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-26 00:33:11.021][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-26 00:33:11.024][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-26 00:33:11.027][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-26 00:33:11.030][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-26 00:33:11.033][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-26 00:33:11.036][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-26 00:33:11.039][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-26 00:33:11.042][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-26 00:33:11.046][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-26 00:33:11.049][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-26 00:33:11.052][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-26 00:33:11.056][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-26 00:33:11.059][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-26 00:33:11.062][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:33:11.064][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.068][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:11.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:11.326][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-08-26 00:33:11.329][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:11.334][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:11.336][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-26 00:33:11.337][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:11.339][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:11.341][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:11.344][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-08-26 00:33:11.346][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:11.349][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:11.351][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-26 00:33:11.353][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:11.356][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:11.358][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-08-26 00:33:11.360][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-08-26 00:33:11.363][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-08-26 00:33:11.366][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:11.368][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:33:11.368][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-08-26 00:33:11.368][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-08-26 00:33:11.371][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-26 00:33:11.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:11.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:11.377][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:11.379][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:11.381][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:11.383][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:11.385][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-26 00:33:11.385][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-08-26 00:33:11.388][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:11.390][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:11.392][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:11.394][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:11.398][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-08-26 00:33:11.401][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-26 00:33:11.404][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-26 00:33:11.408][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-26 00:33:11.412][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-26 00:33:11.419][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:11.421][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-08-26 00:33:11.424][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:11.428][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:33:11.431][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:11.433][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:11.437][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-08-26 00:33:11.439][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-08-26 00:33:11.442][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-26 00:33:11.442][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-08-26 00:33:11.445][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:11.447][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:11.449][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-08-26 00:33:11.451][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-08-26 00:33:11.454][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:11.457][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:33:11.460][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:11.462][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:11.465][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:33:11.468][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:11.470][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-08-26 00:33:11.473][biodb::testThat]
biodb.INFO [2025-08-26 00:33:11.483][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-08-26 00:33:11.486][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:11.489][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:11.496][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:11.500][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:11.503][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:11.507][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:11.509][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:11.513][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:11.515][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:11.518][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:11.521][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:11.528][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-08-26 00:33:11.540][biodb::testThat]
biodb.INFO [2025-08-26 00:33:11.542][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-08-26 00:33:11.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:11.546][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:11.550][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-08-26 00:33:11.553][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-26 00:33:11.556][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:11.560][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-26 00:33:11.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-08-26 00:33:11.567][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-26 00:33:11.571][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-08-26 00:33:11.573][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-26 00:33:11.576][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:33:11.578][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:33:11.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:11.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:11.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:11.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:11.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:11.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:11.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:11.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:11.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:11.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.628][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:11.630][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:11.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.648][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:11.650][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:11.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.658][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.668][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:11.670][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:11.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.678][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:11.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:11.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:11.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.708][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:11.731][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:11.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:11.751][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:11.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:11.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:11.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:11.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:11.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:11.800][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:11.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.819][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:11.822][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:11.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:11.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.842][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:11.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:11.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:11.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:11.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:11.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:11.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:11.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:11.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:11.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:11.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:11.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:11.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:11.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.944][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:11.947][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:11.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:11.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:11.968][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:11.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:11.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.984][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:11.986][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:11.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:11.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:11.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:12.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:12.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.049][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:12.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.058][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:12.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:12.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:12.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:12.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:12.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:12.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:12.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:12.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:12.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:12.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:12.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:12.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:12.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.374][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:12.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:12.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:12.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:12.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:12.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:12.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:12.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.489][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:12.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:12.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:12.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:12.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.547][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:12.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:12.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:12.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:12.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:12.735][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-08-26 00:33:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-26 00:33:12.779][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-26 00:33:12.782][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-08-26 00:33:12.785][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-08-26 00:33:12.787][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-26 00:33:12.788][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:12.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:12.792][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:12.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:12.796][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-26 00:33:12.806][biodb::testContext]
biodb.INFO [2025-08-26 00:33:12.808][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:33:12.810][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-08-26 00:33:12.813][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-26 00:33:12.815][biodb::testContext]
biodb.INFO [2025-08-26 00:33:12.824][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-08-26 00:33:12.828][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-26 00:33:12.836][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:33:12.838][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-26 00:33:12.841][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-26 00:33:12.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.850][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-26 00:33:12.852][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-26 00:33:12.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.862][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-26 00:33:12.864][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-26 00:33:12.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.874][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-26 00:33:12.876][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-26 00:33:12.879][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-26 00:33:12.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.889][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-26 00:33:12.891][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-26 00:33:12.894][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-26 00:33:12.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.903][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-26 00:33:12.906][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-26 00:33:12.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.915][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-26 00:33:12.918][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-26 00:33:12.921][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-26 00:33:12.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.929][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-26 00:33:12.932][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-26 00:33:12.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.940][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-26 00:33:12.942][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-26 00:33:12.945][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-26 00:33:12.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.954][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-26 00:33:12.957][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-26 00:33:12.959][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-26 00:33:12.962][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-26 00:33:12.965][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-26 00:33:12.968][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-26 00:33:12.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.978][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-26 00:33:12.980][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-26 00:33:12.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:12.990][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-26 00:33:12.993][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-26 00:33:12.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:12.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:12.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.002][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-26 00:33:13.004][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-26 00:33:13.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.012][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-26 00:33:13.015][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-08-26 00:33:13.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.025][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-26 00:33:13.028][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-26 00:33:13.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.046][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-26 00:33:13.048][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-26 00:33:13.066][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-26 00:33:13.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.075][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-26 00:33:13.078][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-26 00:33:13.080][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-26 00:33:13.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.090][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-26 00:33:13.094][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.096][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-26 00:33:13.099][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.101][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:13.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.108][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.111][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.113][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-26 00:33:13.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:13.118][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.121][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-26 00:33:13.123][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:13.125][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.128][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.131][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:33:13.131][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-26 00:33:13.131][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-26 00:33:13.131][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-26 00:33:13.131][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-26 00:33:13.133][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:13.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.140][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:13.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.144][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.145][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.147][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:13.148][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:13.151][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.153][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.156][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-26 00:33:13.160][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.163][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-26 00:33:13.165][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.167][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:13.170][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.172][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.175][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.177][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.179][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-26 00:33:13.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:13.184][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.187][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-26 00:33:13.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:13.191][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.194][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.196][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:33:13.196][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-26 00:33:13.196][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-26 00:33:13.196][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-26 00:33:13.196][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-26 00:33:13.199][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:13.201][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.204][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.206][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:13.209][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.211][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.214][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.216][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.219][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:13.221][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:13.224][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.226][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.229][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-26 00:33:13.233][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.236][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-26 00:33:13.238][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.240][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:13.243][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.245][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.248][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.251][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.253][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-26 00:33:13.256][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:13.258][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.261][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-26 00:33:13.264][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:13.266][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.269][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.271][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.273][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:13.276][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.281][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:13.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.288][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.291][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:13.305][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:13.308][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.311][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.315][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-26 00:33:13.320][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.322][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-26 00:33:13.325][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.327][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:13.330][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.332][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.335][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.338][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.341][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-26 00:33:13.344][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:13.346][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.349][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-26 00:33:13.352][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:13.354][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.357][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:13.359][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.362][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-26 00:33:13.365][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.368][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.371][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:13.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:13.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:13.377][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:13.380][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.382][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:13.384][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:13.387][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:13.389][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:13.392][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:33:13.394][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.606][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-26 00:33:13.609][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-26 00:33:13.613][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-26 00:33:13.616][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-26 00:33:13.620][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-26 00:33:13.623][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-26 00:33:13.627][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-26 00:33:13.630][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-26 00:33:13.634][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-26 00:33:13.638][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-26 00:33:13.642][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-26 00:33:13.645][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-26 00:33:13.648][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-26 00:33:13.651][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-26 00:33:13.655][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-26 00:33:13.658][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-26 00:33:13.661][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-26 00:33:13.664][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-26 00:33:13.668][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-26 00:33:13.672][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-26 00:33:13.677][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-26 00:33:13.681][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-26 00:33:13.684][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-26 00:33:13.688][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-26 00:33:13.692][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-26 00:33:13.695][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-26 00:33:13.699][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-26 00:33:13.702][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-26 00:33:13.706][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-26 00:33:13.709][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-26 00:33:13.712][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-26 00:33:13.716][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-26 00:33:13.720][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-26 00:33:13.723][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-26 00:33:13.727][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-26 00:33:13.730][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-26 00:33:13.734][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-26 00:33:13.737][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-26 00:33:13.741][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-26 00:33:13.744][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-26 00:33:13.748][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-26 00:33:13.751][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-26 00:33:13.755][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-26 00:33:13.759][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-26 00:33:13.762][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-26 00:33:13.766][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-26 00:33:13.769][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-26 00:33:13.773][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-26 00:33:13.776][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-26 00:33:13.780][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-26 00:33:13.784][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-26 00:33:13.788][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-26 00:33:13.792][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-26 00:33:13.795][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-26 00:33:13.798][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-26 00:33:13.802][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-26 00:33:13.806][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-26 00:33:13.810][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-26 00:33:13.814][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-26 00:33:13.818][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-26 00:33:13.831][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-26 00:33:13.835][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-26 00:33:13.839][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-26 00:33:13.842][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-26 00:33:13.846][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-26 00:33:13.849][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-26 00:33:13.853][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-26 00:33:13.856][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-26 00:33:13.860][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-26 00:33:13.863][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-26 00:33:13.867][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-26 00:33:13.871][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-26 00:33:13.874][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-26 00:33:13.878][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-26 00:33:13.881][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-26 00:33:13.885][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-26 00:33:13.888][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-26 00:33:13.893][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-26 00:33:13.897][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-26 00:33:13.900][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-26 00:33:13.904][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-26 00:33:13.907][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-26 00:33:13.911][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-26 00:33:13.914][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-26 00:33:13.918][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-08-26 00:33:13.921][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-26 00:33:13.924][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.929][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:13.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:13.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:13.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:13.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:13.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:13.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:13.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:13.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:13.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:13.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:13.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:13.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:13.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:13.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:13.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-26 00:33:14.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:14.195][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-08-26 00:33:14.198][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:14.201][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:14.204][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-26 00:33:14.206][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:14.208][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-26 00:33:14.210][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:14.213][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-08-26 00:33:14.215][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:14.217][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-26 00:33:14.219][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-26 00:33:14.221][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-26 00:33:14.224][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:14.226][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-08-26 00:33:14.229][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-08-26 00:33:14.231][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-08-26 00:33:14.235][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-26 00:33:14.238][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-26 00:33:14.238][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-08-26 00:33:14.238][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-08-26 00:33:14.240][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-26 00:33:14.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:14.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:14.247][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-26 00:33:14.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-26 00:33:14.252][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-26 00:33:14.254][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-26 00:33:14.257][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-26 00:33:14.257][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-08-26 00:33:14.259][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:14.261][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:14.263][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-26 00:33:14.265][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-26 00:33:14.269][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-08-26 00:33:14.273][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-26 00:33:14.276][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-26 00:33:14.280][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-26 00:33:14.284][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-26 00:33:14.291][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:14.293][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-08-26 00:33:14.295][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:14.298][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:33:14.300][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:14.303][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:14.314][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-08-26 00:33:14.317][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-08-26 00:33:14.319][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-08-26 00:33:14.319][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-08-26 00:33:14.322][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-26 00:33:14.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-26 00:33:14.326][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-08-26 00:33:14.328][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-08-26 00:33:14.331][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-08-26 00:33:14.334][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:33:14.337][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:14.339][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:14.342][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-08-26 00:33:14.345][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-08-26 00:33:14.348][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-08-26 00:33:14.351][biodb::testThat]
biodb.INFO [2025-08-26 00:33:14.353][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-08-26 00:33:14.356][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-26 00:33:14.358][biodb::testThat]
biodb.DEBUG[2025-08-26 00:33:14.363][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-26 00:33:14.365][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-08-26 00:33:14.368][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-08-26 00:33:14.374][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:14.378][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:14.381][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:14.385][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:14.387][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:14.390][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:14.392][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:14.394][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:14.396][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:14.398][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:14.400][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-08-26 00:33:14.404][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-08-26 00:33:14.406][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-26 00:33:14.410][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:14.413][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-26 00:33:14.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-08-26 00:33:14.421][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-26 00:33:14.424][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-08-26 00:33:14.427][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-26 00:33:14.429][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:33:14.432][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:33:14.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:14.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:14.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:14.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:14.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:14.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:14.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:14.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:14.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:14.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.486][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:14.488][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:14.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.505][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.508][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.525][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.528][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.574][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.576][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:14.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:14.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:14.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:14.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.636][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:14.638][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:14.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.656][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:14.659][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:14.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.678][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:14.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:14.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:14.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:14.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:14.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:14.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:14.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:14.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:14.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:14.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:14.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:14.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:14.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.778][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:14.781][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:14.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:14.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.799][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:14.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:14.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.834][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:14.837][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:14.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:14.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.893][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:14.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:14.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:14.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:15.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:15.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:15.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.124][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:15.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:15.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:15.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:15.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:15.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:15.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.411][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:15.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:15.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:15.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:15.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:15.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.541][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:15.616][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-08-26 00:33:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:15.681][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:15.684][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:15.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:15.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:15.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:15.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:15.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:15.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:15.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:15.711][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-08-26 00:33:15.714][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-08-26 00:33:15.717][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:15.721][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-08-26 00:33:15.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-08-26 00:33:15.729][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-08-26 00:33:15.732][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-08-26 00:33:15.735][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-08-26 00:33:15.738][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-08-26 00:33:15.740][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-08-26 00:33:15.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:15.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:15.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:15.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:15.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:15.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:15.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:15.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:15.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.790][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.793][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.809][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:15.811][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:15.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.827][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:15.830][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:15.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:15.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:15.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.865][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:15.868][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:15.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.937][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:15.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.955][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.957][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:15.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.974][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:15.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:15.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:15.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:15.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:15.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:15.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:16.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:16.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.058][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.080][ef$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.083][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.101][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:16.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.113][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:16.114][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-08-26 00:33:16.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.173][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.182][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:16.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.191][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-26 00:33:16.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-26 00:33:16.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:16.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.209][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:16.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.219][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-08-26 00:33:16.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-08-26 00:33:16.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:16.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-26 00:33:16.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-26 00:33:16.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:16.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:16.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:16.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-08-26 00:33:16.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:16.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-08-26 00:33:16.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:16.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-08-26 00:33:16.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-08-26 00:33:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:16.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:16.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:16.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-26 00:33:16.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-26 00:33:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-26 00:33:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-26 00:33:16.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:16.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:16.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:16.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-26 00:33:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-26 00:33:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:16.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-08-26 00:33:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.620][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-08-26 00:33:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-26 00:33:16.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-26 00:33:16.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.666][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-08-26 00:33:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-26 00:33:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-26 00:33:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-26 00:33:16.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.764][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:16.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:16.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:16.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-08-26 00:33:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-26 00:33:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-26 00:33:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:16.864][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-08-26 00:33:16.866][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:16.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:16.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:16.915][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:16.918][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:16.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:16.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:16.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:16.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:16.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:16.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:16.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:16.957][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-26 00:33:16.960][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-08-26 00:33:16.963][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-08-26 00:33:16.967][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:16.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:16.975][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:16.978][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:16.981][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:17.018][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:17.021][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:17.023][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:17.026][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:17.029][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:17.031][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-26 00:33:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.068][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:17.112][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:17.115][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:17.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:17.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:17.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:17.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:17.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:17.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:17.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.176][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:17.220][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-08-26 00:33:17.223][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:17.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:17.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:17.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:17.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:17.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:17.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:17.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-26 00:33:17.259][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-08-26 00:33:17.261][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-08-26 00:33:17.264][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-08-26 00:33:17.268][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:17.271][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:17.275][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-08-26 00:33:17.279][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-08-26 00:33:17.281][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-08-26 00:33:17.284][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-08-26 00:33:17.287][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-08-26 00:33:17.289][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-08-26 00:33:17.292][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-08-26 00:33:17.295][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-08-26 00:33:17.297][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-08-26 00:33:17.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:17.374][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-08-26 00:33:17.376][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-08-26 00:33:17.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:17.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:17.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:17.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:17.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:17.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:17.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-26 00:33:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-26 00:33:17.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-08-26 00:33:17.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-08-26 00:33:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-26 00:33:17.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-26 00:33:17.491][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-08-26 00:33:17.494][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-08-26 00:33:17.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-26 00:33:17.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:17.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:17.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:17.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:17.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:17.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-26 00:33:17.550][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-08-26 00:33:17.553][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-08-26 00:33:17.556][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-08-26 00:33:17.559][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-26 00:33:17.568][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-26 00:33:17.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-26 00:33:17.572][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-26 00:33:17.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-26 00:33:17.577][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-26 00:33:17.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 20.306   0.968  25.115

CHECK results for biodbHmdb on merida1

Summary

Command output

Installation output

Tests output

Example timings