Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4481
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4479
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4359
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 174/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biobtreeR 1.18.0  (landing page)
Tamer Gur
Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024)
git_url: https://git.bioconductor.org/packages/biobtreeR
git_branch: RELEASE_3_20
git_last_commit: f8c6833
git_last_commit_date: 2024-10-29 10:42:21 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for biobtreeR on kunpeng2

To the developers/maintainers of the biobtreeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biobtreeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: biobtreeR
Version: 1.18.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data biobtreeR
StartedAt: 2024-11-19 23:09:50 -0000 (Tue, 19 Nov 2024)
EndedAt: 2024-11-19 23:10:12 -0000 (Tue, 19 Nov 2024)
EllapsedTime: 22.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data biobtreeR
###
##############################################################################
##############################################################################


* checking for file ‘biobtreeR/DESCRIPTION’ ... OK
* preparing ‘biobtreeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘biobtreeR.Rmd’ using rmarkdown
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
sh: line 1: /home/biocbuild/tmp/RtmpAW6kXn/biobtree: cannot execute binary file: Exec format error

Quitting from lines 67-68 [unnamed-chunk-4] (biobtreeR.Rmd)
Error: processing vignette 'biobtreeR.Rmd' failed with diagnostics:
Built data couldn't found. Make sure data built or directory set correctly
--- failed re-building ‘biobtreeR.Rmd’

SUMMARY: processing the following file failed:
  ‘biobtreeR.Rmd’

Error: Vignette re-building failed.
Execution halted