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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:biobtreeR.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings biobtreeR_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/biobtreeR.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-29 02:05:53 UTC
* checking for file ‘biobtreeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘biobtreeR’ version ‘1.24.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biobtreeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘biobtreeR.Rmd’ using rmarkdown
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
2026/04/28 22:06:22 Pulling configuration files from https://github.com/tamerh/biobtree-conf/archive/1.11.0.zip 
2026/04/28 22:06:23 Pulling done.
2026/04/28 22:06:23 Pulling pre-build db files from https://github.com/tamerh/biobtree-conf/releases/download/1.11.0/biobtree-conf-1.11.0-set1.tar.gz 
2026/04/28 22:06:54 ExtractTarGz: Copy() failed: write out/db/data.mdb: no space left on device
2026/04/28 22:06:54 Error while reading meta information file which should be produced with generate command. Please make sure you did previous steps correctly. open ./out/aliasdb/alias.meta.json: no such file or directory
biobtree: no process found

Quitting from biobtreeR.Rmd:66-68 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `tryCatchList()`:
! biobtree could not started. Please check that you have built data correctly
---
Backtrace:
    ▆
 1. └─biobtreeR::bbStart()
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'biobtreeR.Rmd' failed with diagnostics:
biobtree could not started. Please check that you have built data correctly
--- failed re-building ‘biobtreeR.Rmd’

SUMMARY: processing the following file failed:
  ‘biobtreeR.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/biobtreeR.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL biobtreeR
###
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘biobtreeR’ ...
** this is package ‘biobtreeR’ version ‘1.24.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biobtreeR)