| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 147/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| beadarray 2.55.0 (landing page) Mark Dunning
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the beadarray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: beadarray |
| Version: 2.55.0 |
| Command: chmod a+r beadarray -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data beadarray |
| StartedAt: 2024-06-09 17:23:04 -0400 (Sun, 09 Jun 2024) |
| EndedAt: 2024-06-09 17:27:44 -0400 (Sun, 09 Jun 2024) |
| EllapsedTime: 280.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r beadarray -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data beadarray ### ############################################################################## ############################################################################## * checking for file 'beadarray/DESCRIPTION' ... OK * preparing 'beadarray': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'ImageProcessing.rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "ImageProcessing.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'ImageProcessing.rnw' failed with diagnostics: running 'texi2dvi' on 'ImageProcessing.tex' failed LaTeX errors: ttes/ImageProcessing.tex:64: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/ImageProcessing.tex:84: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/ImageProcessing.tex:99: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/ImageProcessing.tex:112: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/ImageProcessing.tex:126: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/ImageProcessing.tex:158: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... --- failed re-building 'ImageProcessing.rnw' --- re-building 'beadarray.rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "beadarray.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'beadarray.rnw' failed with diagnostics: running 'texi2dvi' on 'beadarray.tex' failed LaTeX errors: ttes/beadarray.tex:66: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadarray.tex:80: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadarray.tex:92: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadarray.tex:150: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... --- failed re-building 'beadarray.rnw' --- re-building 'beadlevel.rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "beadlevel.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'beadlevel.rnw' failed with diagnostics: running 'texi2dvi' on 'beadlevel.tex' failed LaTeX errors: ttes/beadlevel.tex:58: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:101: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:121: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:176: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:231: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:265: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:317: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:326: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:355: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:365: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:381: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:407: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:423: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:431: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:446: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:474: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:492: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:528: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadlevel.tex:559: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... --- failed re-building 'beadlevel.rnw' --- re-building 'beadsummary.rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "beadsummary.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'beadsummary.rnw' failed with diagnostics: running 'texi2dvi' on 'beadsummary.tex' failed LaTeX errors: ttes/beadsummary.tex:65: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:76: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:118: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:161: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:214: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:279: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:334: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:371: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:382: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:393: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:404: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:416: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:529: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:544: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:564: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:604: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:622: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:645: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:663: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:674: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:692: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:741: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:761: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:870: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:951: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:995: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1071: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1097: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1113: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1128: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1141: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1159: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1174: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1187: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1200: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1213: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary.tex:1272: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ttes/beadsummary --- failed re-building 'beadsummary.rnw' SUMMARY: processing the following files failed: 'ImageProcessing.rnw' 'beadarray.rnw' 'beadlevel.rnw' 'beadsummary.rnw' Error: Vignette re-building failed. Execution halted