Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 152/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
beadarray 2.56.0 (landing page) Mark Dunning
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the beadarray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: beadarray |
Version: 2.56.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray |
StartedAt: 2024-12-19 19:18:26 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-19 19:21:20 -0500 (Thu, 19 Dec 2024) |
EllapsedTime: 173.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray ### ############################################################################## ############################################################################## * checking for file ‘beadarray/DESCRIPTION’ ... OK * preparing ‘beadarray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ImageProcessing.Rmd’ using rmarkdown --- finished re-building ‘ImageProcessing.Rmd’ --- re-building ‘beadarray.Rmd’ using rmarkdown --- finished re-building ‘beadarray.Rmd’ --- re-building ‘beadlevel.Rmd’ using rmarkdown 2024-12-19 19:19:31.526 R[52719:75494521] XType: Using static font registry. --- finished re-building ‘beadlevel.Rmd’ --- re-building ‘beadsummary.Rmd’ using rmarkdown trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz' Content type 'application/x-gzip' length 3658664 bytes (3.5 MB) ================================================== downloaded 3.5 MB Quitting from lines 427-434 [unnamed-chunk-32] (beadsummary.Rmd) Error: processing vignette 'beadsummary.Rmd' failed with diagnostics: vector memory limit of 64.0 Gb reached, see mem.maxVSize() --- failed re-building ‘beadsummary.Rmd’ SUMMARY: processing the following file failed: ‘beadsummary.Rmd’ Error: Vignette re-building failed. Execution halted