Back to Multiple platform build/check report for BioC 3.20:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-12-23 12:03 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 139/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basilisk 1.18.0  (landing page)
Aaron Lun
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/basilisk
git_branch: RELEASE_3_20
git_last_commit: 31887d4
git_last_commit_date: 2024-10-29 10:43:26 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    TIMEOUT    OK  
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for basilisk on nebbiolo2

To the developers/maintainers of the basilisk package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: basilisk
Version: 1.18.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings basilisk_1.18.0.tar.gz
StartedAt: 2024-12-19 20:15:34 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 20:38:46 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 1392.1 seconds
RetCode: 0
Status:   OK  
CheckDir: basilisk.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings basilisk_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
basiliskStart          126.070 10.678 140.610
createLocalBasiliskEnv  61.099  4.905  69.187
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’
for details.

Installation output

basilisk.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL basilisk
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (basilisk)

Tests output

basilisk.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.10.14
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-26_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-26_linux64_openblas 
  libgfortran        conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1 
  libgfortran5       conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-26_linux64_openblas 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  numpy              conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0 
  pandas             conda-forge/linux-64::pandas-1.4.3-py310h769672d_0 
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 
  python_abi         conda-forge/linux-64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=1.4.2
    - python-dateutil=2.8.1
    - python=3.10.14
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-26_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-26_linux64_openblas 
  libgfortran        conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1 
  libgfortran5       conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-26_linux64_openblas 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  numpy              conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0 
  pandas             conda-forge/linux-64::pandas-1.4.2-py310h769672d_2 
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0 
  python_abi         conda-forge/linux-64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=2.7


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  certifi            conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  libsqlite          conda-forge/linux-64::libsqlite-3.46.0-hde9e2c9_0 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  libzlib            conda-forge/linux-64::libzlib-1.2.13-h4ab18f5_6 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-1.1.1w-hd590300_0 
  pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0 
  python             conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython 
  python_abi         conda-forge/linux-64::python_abi-2.7-1_cp27mu 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/linux-64::setuptools-44.0.0-py27_0 
  sqlite             conda-forge/linux-64::sqlite-3.46.0-h6d4b2fc_0 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0 
  zlib               conda-forge/linux-64::zlib-1.2.13-h4ab18f5_6 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python-dateutil=2.8.1
    - python=3.10.14
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0 
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
  Using cached pandas-1.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.21.0 (from pandas==1.4.2)
  Using cached numpy-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.17.0)
Using cached pandas-1.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB)
Using cached numpy-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-2.2.0 pandas-1.4.2
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Processing /home/biocbuild/bbs-3.20-bioc/R/site-library/basilisk/example/inst/test_dummy
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
  Building wheel for test_dummy (setup.py): started
  Building wheel for test_dummy (setup.py): finished with status 'done'
  Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1279 sha256=f29324e869f5da8d805703782e1a63c2326b85d5d03cfd4152711ebe0073fe38
  Stored in directory: /home/biocbuild/bbs-3.20-bioc/tmpdir/pip-ephem-wheel-cache-_cqgkc9y/wheels/1c/54/a3/d45a8fc417e6bf1735de6f8b82e42ba76de61164beecd61c26
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

PackagesNotFoundError: The following packages are not available from current channels:

  - whheeeeeeeeeeeeeeeeee=0.0.1*

Current channels:

  - https://conda.anaconda.org/conda-forge

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.


trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Miniforge3-24.3.0-0-Linux-x86_64.sh'
Content type 'application/octet-stream' length 82796318 bytes (79.0 MB)
==================================================
downloaded 79.0 MB

PREFIX=/home/biocbuild/bbs-3.20-bioc/tmpdir/RtmphIAGho/file3d167320e2b60c/1.18.0/0
Unpacking payload ...
Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2
Extracting ca-certificates-2024.2.2-hbcca054_0.conda
Extracting ld_impl_linux-64-2.40-h41732ed_0.conda
Extracting libstdcxx-ng-13.2.0-h7e041cc_5.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.10-4_cp310.conda
Extracting tzdata-2024a-h0c530f3_0.conda
Extracting libgomp-13.2.0-h807b86a_5.conda
Extracting _openmp_mutex-4.5-2_gnu.tar.bz2
Extracting libgcc-ng-13.2.0-h807b86a_5.conda
Extracting bzip2-1.0.8-hd590300_5.conda
Extracting c-ares-1.28.1-hd590300_0.conda
Extracting fmt-10.2.1-h00ab1b0_0.conda
Extracting icu-73.2-h59595ed_0.conda
Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2
Extracting libev-4.33-hd590300_2.conda
Extracting libffi-3.4.2-h7f98852_5.tar.bz2
Extracting libiconv-1.17-hd590300_2.conda
Extracting libnsl-2.0.1-hd590300_0.conda
Extracting libuuid-2.38.1-h0b41bf4_0.conda
Extracting libxcrypt-4.4.36-hd590300_1.conda
Extracting libzlib-1.2.13-hd590300_5.conda
Extracting lz4-c-1.9.4-hcb278e6_0.conda
Extracting lzo-2.10-h516909a_1000.tar.bz2
Extracting ncurses-6.4.20240210-h59595ed_0.conda
Extracting openssl-3.2.1-hd590300_1.conda
Extracting reproc-14.2.4.post0-hd590300_1.conda
Extracting xz-5.2.6-h166bdaf_0.tar.bz2
Extracting yaml-cpp-0.8.0-h59595ed_0.conda
Extracting libedit-3.1.20191231-he28a2e2_2.tar.bz2
Extracting libnghttp2-1.58.0-h47da74e_1.conda
Extracting libsolv-0.7.28-hfc55251_2.conda
Extracting libsqlite-3.45.2-h2797004_0.conda
Extracting libssh2-1.11.0-h0841786_0.conda
Extracting libxml2-2.12.6-h232c23b_1.conda
Extracting readline-8.2-h8228510_1.conda
Extracting reproc-cpp-14.2.4.post0-h59595ed_1.conda
Extracting tk-8.6.13-noxft_h4845f30_101.conda
Extracting zstd-1.5.5-hfc55251_0.conda
Extracting krb5-1.21.2-h659d440_0.conda
Extracting libarchive-3.7.2-h2aa1ff5_1.conda
Extracting python-3.10.14-hd12c33a_0_cpython.conda
Extracting libcurl-8.7.1-hca28451_0.conda
Extracting menuinst-2.0.2-py310hff52083_0.conda
Extracting archspec-0.2.3-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_0.conda
Extracting brotli-python-1.1.0-py310hc6cd4ac_1.conda
Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
Extracting distro-1.9.0-pyhd8ed1ab_0.conda
Extracting idna-3.6-pyhd8ed1ab_0.conda
Extracting jsonpointer-2.4-py310hff52083_3.conda
Extracting libmamba-1.5.8-had39da4_0.conda
Extracting packaging-24.0-pyhd8ed1ab_0.conda
Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda
Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda
Extracting pycosat-0.6.6-py310h2372a71_0.conda
Extracting pycparser-2.22-pyhd8ed1ab_0.conda
Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2
Extracting ruamel.yaml.clib-0.2.8-py310h2372a71_0.conda
Extracting setuptools-69.5.1-pyhd8ed1ab_0.conda
Extracting truststore-0.8.0-pyhd8ed1ab_0.conda
Extracting wheel-0.43.0-pyhd8ed1ab_1.conda
Extracting cffi-1.16.0-py310h2fee648_0.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda
Extracting libmambapy-1.5.8-py310h39ff949_0.conda
Extracting pip-24.0-pyhd8ed1ab_0.conda
Extracting ruamel.yaml-0.18.6-py310h2372a71_0.conda
Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda
Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda
Extracting requests-2.31.0-pyhd8ed1ab_0.conda
Extracting zstandard-0.22.0-py310h1275a96_0.conda
Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda
Extracting conda-package-handling-2.2.0-pyh38be061_0.conda
Extracting conda-24.3.0-py310hff52083_0.conda
Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda
Extracting mamba-1.5.8-py310h51d5547_0.conda

Installing base environment...

Transaction

  Prefix: /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmphIAGho/file3d167320e2b60c/1.18.0/0

  Updating specs:

   - conda-forge/linux-64::_libgcc_mutex==0.1=conda_forge[md5=d7c89558ba9fa0495403155b64376d81]
   - conda-forge/linux-64::ca-certificates==2024.2.2=hbcca054_0[md5=2f4327a1cbe7f022401b236e915a5fef]
   - conda-forge/linux-64::ld_impl_linux-64==2.40=h41732ed_0[md5=7aca3059a1729aa76c597603f10b0dd3]
   - conda-forge/linux-64::libstdcxx-ng==13.2.0=h7e041cc_5[md5=f6f6600d18a4047b54f803cf708b868a]
   - conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
   - conda-forge/linux-64::python_abi==3.10=4_cp310[md5=26322ec5d7712c3ded99dd656142b8ce]
   - conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8]
   - conda-forge/linux-64::libgomp==13.2.0=h807b86a_5[md5=d211c42b9ce49aee3734fdc828731689]
   - conda-forge/linux-64::_openmp_mutex==4.5=2_gnu[md5=73aaf86a425cc6e73fcf236a5a46396d]
   - conda-forge/linux-64::libgcc-ng==13.2.0=h807b86a_5[md5=d4ff227c46917d3b4565302a2bbb276b]
   - conda-forge/linux-64::bzip2==1.0.8=hd590300_5[md5=69b8b6202a07720f448be700e300ccf4]
   - conda-forge/linux-64::c-ares==1.28.1=hd590300_0[md5=dcde58ff9a1f30b0037a2315d1846d1f]
   - conda-forge/linux-64::fmt==10.2.1=h00ab1b0_0[md5=35ef8bc24bd34074ebae3c943d551728]
   - conda-forge/linux-64::icu==73.2=h59595ed_0[md5=cc47e1facc155f91abd89b11e48e72ff]
   - conda-forge/linux-64::keyutils==1.6.1=h166bdaf_0[md5=30186d27e2c9fa62b45fb1476b7200e3]
   - conda-forge/linux-64::libev==4.33=hd590300_2[md5=172bf1cd1ff8629f2b1179945ed45055]
   - conda-forge/linux-64::libffi==3.4.2=h7f98852_5[md5=d645c6d2ac96843a2bfaccd2d62b3ac3]
   - conda-forge/linux-64::libiconv==1.17=hd590300_2[md5=d66573916ffcf376178462f1b61c941e]
   - conda-forge/linux-64::libnsl==2.0.1=hd590300_0[md5=30fd6e37fe21f86f4bd26d6ee73eeec7]
   - conda-forge/linux-64::libuuid==2.38.1=h0b41bf4_0[md5=40b61aab5c7ba9ff276c41cfffe6b80b]
   - conda-forge/linux-64::libxcrypt==4.4.36=hd590300_1[md5=5aa797f8787fe7a17d1b0821485b5adc]
   - conda-forge/linux-64::libzlib==1.2.13=hd590300_5[md5=f36c115f1ee199da648e0597ec2047ad]
   - conda-forge/linux-64::lz4-c==1.9.4=hcb278e6_0[md5=318b08df404f9c9be5712aaa5a6f0bb0]
   - conda-forge/linux-64::lzo==2.10=h516909a_1000[md5=bb14fcb13341b81d5eb386423b9d2bac]
   - conda-forge/linux-64::ncurses==6.4.20240210=h59595ed_0[md5=97da8860a0da5413c7c98a3b3838a645]
   - conda-forge/linux-64::openssl==3.2.1=hd590300_1[md5=9d731343cff6ee2e5a25c4a091bf8e2a]
   - conda-forge/linux-64::reproc==14.2.4.post0=hd590300_1[md5=82ca53502dfd5a64a80dee76dae14685]
   - conda-forge/linux-64::xz==5.2.6=h166bdaf_0[md5=2161070d867d1b1204ea749c8eec4ef0]
   - conda-forge/linux-64::yaml-cpp==0.8.0=h59595ed_0[md5=965eaacd7c18eb8361fd12bb9e7a57d7]
   - conda-forge/linux-64::libedit==3.1.20191231=he28a2e2_2[md5=4d331e44109e3f0e19b4cb8f9b82f3e1]
   - conda-forge/linux-64::libnghttp2==1.58.0=h47da74e_1[md5=700ac6ea6d53d5510591c4344d5c989a]
   - conda-forge/linux-64::libsolv==0.7.28=hfc55251_2[md5=535bafe1ed0a5bdd3f4c125ca05d378c]
   - conda-forge/linux-64::libsqlite==3.45.2=h2797004_0[md5=866983a220e27a80cb75e85cb30466a1]
   - conda-forge/linux-64::libssh2==1.11.0=h0841786_0[md5=1f5a58e686b13bcfde88b93f547d23fe]
   - conda-forge/linux-64::libxml2==2.12.6=h232c23b_1[md5=6853448e9ca1cfd5f15382afd2a6d123]
   - conda-forge/linux-64::readline==8.2=h8228510_1[md5=47d31b792659ce70f470b5c82fdfb7a4]
   - conda-forge/linux-64::reproc-cpp==14.2.4.post0=h59595ed_1[md5=715e1d720ec1a03715bebd237972fca5]
   - conda-forge/linux-64::tk==8.6.13=noxft_h4845f30_101[md5=d453b98d9c83e71da0741bb0ff4d76bc]
   - conda-forge/linux-64::zstd==1.5.5=hfc55251_0[md5=04b88013080254850d6c01ed54810589]
   - conda-forge/linux-64::krb5==1.21.2=h659d440_0[md5=cd95826dbd331ed1be26bdf401432844]
   - conda-forge/linux-64::libarchive==3.7.2=h2aa1ff5_1[md5=3bf887827d1968275978361a6e405e4f]
   - conda-forge/linux-64::python==3.10.14=hd12c33a_0_cpython[md5=2b4ba962994e8bd4be9ff5b64b75aff2]
   - conda-forge/linux-64::libcurl==8.7.1=hca28451_0[md5=755c7f876815003337d2c61ff5d047e5]
   - conda-forge/linux-64::menuinst==2.0.2=py310hff52083_0[md5=4837faab0d3e665df57fef662148c6a3]
   - conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b]
   - conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_0[md5=61de176bd62041f9cd5bd4fcd09eb0ff]
   - conda-forge/linux-64::brotli-python==1.1.0=py310hc6cd4ac_1[md5=1f95722c94f00b69af69a066c7433714]
   - conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333]
   - conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a]
   - conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99]
   - conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726]
   - conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134]
   - conda-forge/linux-64::jsonpointer==2.4=py310hff52083_3[md5=08ec1463dbc5c806a32fc431874032ca]
   - conda-forge/linux-64::libmamba==1.5.8=had39da4_0[md5=def669885dc103d8acb7ac2ac35e0b2f]
   - conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8]
   - conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20]
   - conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976]
   - conda-forge/linux-64::pycosat==0.6.6=py310h2372a71_0[md5=0adaac9a86d59adae2bc86b3cdef2df1]
   - conda-forge/noarch::pycparser==2.22=pyhd8ed1ab_0[md5=844d9eb3b43095b031874477f7d70088]
   - conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025]
   - conda-forge/linux-64::ruamel.yaml.clib==0.2.8=py310h2372a71_0[md5=dcf6d2535586c77b31425ed835610c54]
   - conda-forge/noarch::setuptools==69.5.1=pyhd8ed1ab_0[md5=7462280d81f639363e6e63c81276bd9e]
   - conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11]
   - conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_1[md5=0b5293a157c2b5cd513dd1b03d8d3aae]
   - conda-forge/linux-64::cffi==1.16.0=py310h2fee648_0[md5=45846a970e71ac98fd327da5d40a0a2c]
   - conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff]
   - conda-forge/linux-64::libmambapy==1.5.8=py310h39ff949_0[md5=37f8aa15b73c4691eeec15caf45aab25]
   - conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67]
   - conda-forge/linux-64::ruamel.yaml==0.18.6=py310h2372a71_0[md5=50b7d9b39099cdbabf65bf27df73a793]
   - conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776]
   - conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016]
   - conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b]
   - conda-forge/linux-64::zstandard==0.22.0=py310h1275a96_0[md5=54698ba13cd3494547b289cd86a2176a]
   - conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b]
   - conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6]
   - conda-forge/linux-64::conda==24.3.0=py310hff52083_0[md5=4187d17c4b75d8f7757820e835c507c9]
   - conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531]
   - conda-forge/linux-64::mamba==1.5.8=py310h51d5547_0[md5=3b335eaa4894cbb5379a75f83a4d6b40]


  Package                         Version  Build               Channel         Size
─────────────────────────────────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex                     0.1  conda_forge         conda-forge         
  + ca-certificates              2024.2.2  hbcca054_0          conda-forge         
  + ld_impl_linux-64                 2.40  h41732ed_0          conda-forge         
  + libstdcxx-ng                   13.2.0  h7e041cc_5          conda-forge         
  + pybind11-abi                        4  hd8ed1ab_3          conda-forge         
  + python_abi                       3.10  4_cp310             conda-forge         
  + tzdata                          2024a  h0c530f3_0          conda-forge         
  + libgomp                        13.2.0  h807b86a_5          conda-forge         
  + _openmp_mutex                     4.5  2_gnu               conda-forge         
  + libgcc-ng                      13.2.0  h807b86a_5          conda-forge         
  + bzip2                           1.0.8  hd590300_5          conda-forge         
  + c-ares                         1.28.1  hd590300_0          conda-forge         
  + fmt                            10.2.1  h00ab1b0_0          conda-forge         
  + icu                              73.2  h59595ed_0          conda-forge         
  + keyutils                        1.6.1  h166bdaf_0          conda-forge         
  + libev                            4.33  hd590300_2          conda-forge         
  + libffi                          3.4.2  h7f98852_5          conda-forge         
  + libiconv                         1.17  hd590300_2          conda-forge         
  + libnsl                          2.0.1  hd590300_0          conda-forge         
  + libuuid                        2.38.1  h0b41bf4_0          conda-forge         
  + libxcrypt                      4.4.36  hd590300_1          conda-forge         
  + libzlib                        1.2.13  hd590300_5          conda-forge         
  + lz4-c                           1.9.4  hcb278e6_0          conda-forge         
  + lzo                              2.10  h516909a_1000       conda-forge         
  + ncurses                  6.4.20240210  h59595ed_0          conda-forge         
  + openssl                         3.2.1  hd590300_1          conda-forge         
  + reproc                   14.2.4.post0  hd590300_1          conda-forge         
  + xz                              5.2.6  h166bdaf_0          conda-forge         
  + yaml-cpp                        0.8.0  h59595ed_0          conda-forge         
  + libedit                  3.1.20191231  he28a2e2_2          conda-forge         
  + libnghttp2                     1.58.0  h47da74e_1          conda-forge         
  + libsolv                        0.7.28  hfc55251_2          conda-forge         
  + libsqlite                      3.45.2  h2797004_0          conda-forge         
  + libssh2                        1.11.0  h0841786_0          conda-forge         
  + libxml2                        2.12.6  h232c23b_1          conda-forge         
  + readline                          8.2  h8228510_1          conda-forge         
  + reproc-cpp               14.2.4.post0  h59595ed_1          conda-forge         
  + tk                             8.6.13  noxft_h4845f30_101  conda-forge         
  + zstd                            1.5.5  hfc55251_0          conda-forge         
  + krb5                           1.21.2  h659d440_0          conda-forge         
  + libarchive                      3.7.2  h2aa1ff5_1          conda-forge         
  + python                        3.10.14  hd12c33a_0_cpython  conda-forge         
  + libcurl                         8.7.1  hca28451_0          conda-forge         
  + menuinst                        2.0.2  py310hff52083_0     conda-forge         
  + archspec                        0.2.3  pyhd8ed1ab_0        conda-forge         
  + boltons                        24.0.0  pyhd8ed1ab_0        conda-forge         
  + brotli-python                   1.1.0  py310hc6cd4ac_1     conda-forge         
  + certifi                      2024.2.2  pyhd8ed1ab_0        conda-forge         
  + charset-normalizer              3.3.2  pyhd8ed1ab_0        conda-forge         
  + colorama                        0.4.6  pyhd8ed1ab_0        conda-forge         
  + distro                          1.9.0  pyhd8ed1ab_0        conda-forge         
  + idna                              3.6  pyhd8ed1ab_0        conda-forge         
  + jsonpointer                       2.4  py310hff52083_3     conda-forge         
  + libmamba                        1.5.8  had39da4_0          conda-forge         
  + packaging                        24.0  pyhd8ed1ab_0        conda-forge         
  + platformdirs                    4.2.0  pyhd8ed1ab_0        conda-forge         
  + pluggy                          1.4.0  pyhd8ed1ab_0        conda-forge         
  + pycosat                         0.6.6  py310h2372a71_0     conda-forge         
  + pycparser                        2.22  pyhd8ed1ab_0        conda-forge         
  + pysocks                         1.7.1  pyha2e5f31_6        conda-forge         
  + ruamel.yaml.clib                0.2.8  py310h2372a71_0     conda-forge         
  + setuptools                     69.5.1  pyhd8ed1ab_0        conda-forge         
  + truststore                      0.8.0  pyhd8ed1ab_0        conda-forge         
  + wheel                          0.43.0  pyhd8ed1ab_1        conda-forge         
  + cffi                           1.16.0  py310h2fee648_0     conda-forge         
  + jsonpatch                        1.33  pyhd8ed1ab_0        conda-forge         
  + libmambapy                      1.5.8  py310h39ff949_0     conda-forge         
  + pip                              24.0  pyhd8ed1ab_0        conda-forge         
  + ruamel.yaml                    0.18.6  py310h2372a71_0     conda-forge         
  + tqdm                           4.66.2  pyhd8ed1ab_0        conda-forge         
  + urllib3                         2.2.1  pyhd8ed1ab_0        conda-forge         
  + requests                       2.31.0  pyhd8ed1ab_0        conda-forge         
  + zstandard                      0.22.0  py310h1275a96_0     conda-forge         
  + conda-package-streaming         0.9.0  pyhd8ed1ab_0        conda-forge         
  + conda-package-handling          2.2.0  pyh38be061_0        conda-forge         
  + conda                          24.3.0  py310hff52083_0     conda-forge         
  + conda-libmamba-solver          24.1.0  pyhd8ed1ab_0        conda-forge         
  + mamba                           1.5.8  py310h51d5547_0     conda-forge         

  Summary:

  Install: 78 packages

  Total download: 0 B

─────────────────────────────────────────────────────────────────────────────────────



Transaction starting
Linking _libgcc_mutex-0.1-conda_forge
Linking ca-certificates-2024.2.2-hbcca054_0
Linking ld_impl_linux-64-2.40-h41732ed_0
Linking libstdcxx-ng-13.2.0-h7e041cc_5
Linking pybind11-abi-4-hd8ed1ab_3
Linking python_abi-3.10-4_cp310
Linking tzdata-2024a-h0c530f3_0
Linking libgomp-13.2.0-h807b86a_5
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-ng-13.2.0-h807b86a_5
Linking bzip2-1.0.8-hd590300_5
Linking c-ares-1.28.1-hd590300_0
Linking fmt-10.2.1-h00ab1b0_0
Linking icu-73.2-h59595ed_0
Linking keyutils-1.6.1-h166bdaf_0
Linking libev-4.33-hd590300_2
Linking libffi-3.4.2-h7f98852_5
Linking libiconv-1.17-hd590300_2
Linking libnsl-2.0.1-hd590300_0
Linking libuuid-2.38.1-h0b41bf4_0
Linking libxcrypt-4.4.36-hd590300_1
Linking libzlib-1.2.13-hd590300_5
Linking lz4-c-1.9.4-hcb278e6_0
Linking lzo-2.10-h516909a_1000
Linking ncurses-6.4.20240210-h59595ed_0
Linking openssl-3.2.1-hd590300_1
Linking reproc-14.2.4.post0-hd590300_1
Linking xz-5.2.6-h166bdaf_0
Linking yaml-cpp-0.8.0-h59595ed_0
Linking libedit-3.1.20191231-he28a2e2_2
Linking libnghttp2-1.58.0-h47da74e_1
Linking libsolv-0.7.28-hfc55251_2
Linking libsqlite-3.45.2-h2797004_0
Linking libssh2-1.11.0-h0841786_0
Linking libxml2-2.12.6-h232c23b_1
Linking readline-8.2-h8228510_1
Linking reproc-cpp-14.2.4.post0-h59595ed_1
Linking tk-8.6.13-noxft_h4845f30_101
Linking zstd-1.5.5-hfc55251_0
Linking krb5-1.21.2-h659d440_0
Linking libarchive-3.7.2-h2aa1ff5_1
Linking python-3.10.14-hd12c33a_0_cpython
Linking libcurl-8.7.1-hca28451_0
Linking menuinst-2.0.2-py310hff52083_0
Linking archspec-0.2.3-pyhd8ed1ab_0
Linking boltons-24.0.0-pyhd8ed1ab_0
Linking brotli-python-1.1.0-py310hc6cd4ac_1
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking idna-3.6-pyhd8ed1ab_0
Linking jsonpointer-2.4-py310hff52083_3
Linking libmamba-1.5.8-had39da4_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking platformdirs-4.2.0-pyhd8ed1ab_0
Linking pluggy-1.4.0-pyhd8ed1ab_0
Linking pycosat-0.6.6-py310h2372a71_0
Linking pycparser-2.22-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking ruamel.yaml.clib-0.2.8-py310h2372a71_0
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking truststore-0.8.0-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking cffi-1.16.0-py310h2fee648_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking libmambapy-1.5.8-py310h39ff949_0
Linking pip-24.0-pyhd8ed1ab_0
Linking ruamel.yaml-0.18.6-py310h2372a71_0
Linking tqdm-4.66.2-pyhd8ed1ab_0
Linking urllib3-2.2.1-pyhd8ed1ab_0
Linking requests-2.31.0-pyhd8ed1ab_0
Linking zstandard-0.22.0-py310h1275a96_0
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking conda-24.3.0-py310hff52083_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking mamba-1.5.8-py310h51d5547_0

Transaction finished

To activate this environment, use:

    micromamba activate /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmphIAGho/file3d167320e2b60c/1.18.0/0

Or to execute a single command in this environment, use:

    micromamba run -p /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmphIAGho/file3d167320e2b60c/1.18.0/0 mycommand

installation finished.
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmphIAGho/file3d167320e2b60c/1.18.0/basilisk.utils/1.18.0/test

  added / updated specs:
    - python=3.10.14


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    bzip2-1.0.8                |       h4bc722e_7         247 KB  conda-forge
    ca-certificates-2024.12.14 |       hbcca054_0         153 KB  conda-forge
    ld_impl_linux-64-2.43      |       h712a8e2_2         654 KB  conda-forge
    libgcc-14.2.0              |       h77fa898_1         829 KB  conda-forge
    libgcc-ng-14.2.0           |       h69a702a_1          53 KB  conda-forge
    libgomp-14.2.0             |       h77fa898_1         450 KB  conda-forge
    liblzma-5.6.3              |       hb9d3cd8_1         109 KB  conda-forge
    liblzma-devel-5.6.3        |       hb9d3cd8_1         368 KB  conda-forge
    libsqlite-3.47.2           |       hee588c1_0         853 KB  conda-forge
    libzlib-1.3.1              |       hb9d3cd8_2          60 KB  conda-forge
    ncurses-6.5                |       he02047a_1         868 KB  conda-forge
    openssl-3.4.0              |       hb9d3cd8_0         2.8 MB  conda-forge
    pip-24.3.1                 |     pyh8b19718_2         1.2 MB  conda-forge
    setuptools-75.6.0          |     pyhff2d567_1         756 KB  conda-forge
    tzdata-2024b               |       hc8b5060_0         119 KB  conda-forge
    wheel-0.45.1               |     pyhd8ed1ab_1          61 KB  conda-forge
    xz-5.6.3                   |       hbcc6ac9_1          23 KB  conda-forge
    xz-gpl-tools-5.6.3         |       hbcc6ac9_1          33 KB  conda-forge
    xz-tools-5.6.3             |       hb9d3cd8_1          88 KB  conda-forge
    ------------------------------------------------------------
                                           Total:         9.6 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmphIAGho/file3d167320e2b60c/1.18.0/basilisk.utils/1.18.0/test

  added / updated specs:
    - pandas=1.4.3
    - python=3.10.14


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    libblas-3.9.0              |26_linux64_openblas          16 KB  conda-forge
    libcblas-3.9.0             |26_linux64_openblas          16 KB  conda-forge
    libgfortran-14.2.0         |       h69a702a_1          53 KB  conda-forge
    libgfortran5-14.2.0        |       hd5240d6_1         1.4 MB  conda-forge
    liblapack-3.9.0            |26_linux64_openblas          16 KB  conda-forge
    libopenblas-0.3.28         |pthreads_h94d23a6_1         5.3 MB  conda-forge
    libstdcxx-14.2.0           |       hc0a3c3a_1         3.7 MB  conda-forge
    libstdcxx-ng-14.2.0        |       h4852527_1          53 KB  conda-forge
    numpy-1.26.4               |  py310hb13e2d6_0         6.7 MB  conda-forge
    pandas-1.4.3               |  py310h769672d_0        12.5 MB  conda-forge
    python-dateutil-2.9.0.post0|     pyhff2d567_1         217 KB  conda-forge
    python_abi-3.10            |          5_cp310           6 KB  conda-forge
    pytz-2024.2                |     pyhd8ed1ab_1         182 KB  conda-forge
    six-1.17.0                 |     pyhd8ed1ab_0          16 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        30.1 MB

The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-26_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-26_linux64_openblas 
  libgfortran        conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1 
  libgfortran5       conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-26_linux64_openblas 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  numpy              conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0 
  pandas             conda-forge/linux-64::pandas-1.4.3-py310h769672d_0 
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_1 
  python_abi         conda-forge/linux-64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_1 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.10.14
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-26_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-26_linux64_openblas 
  libgfortran        conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1 
  libgfortran5       conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-26_linux64_openblas 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  numpy              conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0 
  pandas             conda-forge/linux-64::pandas-1.4.3-py310h769672d_0 
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 
  python_abi         conda-forge/linux-64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.10.14
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-26_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-26_linux64_openblas 
  libgfortran        conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1 
  libgfortran5       conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-26_linux64_openblas 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  numpy              conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0 
  pandas             conda-forge/linux-64::pandas-1.4.3-py310h769672d_0 
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 
  python_abi         conda-forge/linux-64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.12.14-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc             conda-forge/linux-64::libgcc-14.2.0-h77fa898_1 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1 
  libgomp            conda-forge/linux-64::libgomp-14.2.0-h77fa898_1 
  liblzma            conda-forge/linux-64::liblzma-5.6.3-hb9d3cd8_1 
  liblzma-devel      conda-forge/linux-64::liblzma-devel-5.6.3-hb9d3cd8_1 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.47.2-hee588c1_0 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2 
  ncurses            conda-forge/linux-64::ncurses-6.5-he02047a_1 
  openssl            conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_2 
  python             conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024b-hc8b5060_0 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.6.3-hbcc6ac9_1 
  xz-gpl-tools       conda-forge/linux-64::xz-gpl-tools-5.6.3-hbcc6ac9_1 
  xz-tools           conda-forge/linux-64::xz-tools-5.6.3-hb9d3cd8_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - pandas=1.4.2
    - python-dateutil=2.8.1
    - python=3.10.14
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/linux-64::libblas-3.9.0-26_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-26_linux64_openblas 
  libgfortran        conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1 
  libgfortran5       conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-26_linux64_openblas 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1 
  libstdcxx          conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1 
  numpy              conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0 
  pandas             conda-forge/linux-64::pandas-1.4.2-py310h769672d_2 
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0 
  python_abi         conda-forge/linux-64::python_abi-3.10-5_cp310 
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0 
  six                conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
> 
> proc.time()
   user  system elapsed 
687.292  64.588 780.579

Example timings

basilisk.Rcheck/basilisk-Ex.timings

nameusersystemelapsed
BasiliskEnvironment-class0.0030.0000.003
PyPiLink000
basiliskOptions000
basiliskStart126.070 10.678140.610
configureBasiliskEnv000
createLocalBasiliskEnv61.099 4.90569.187
listPackages0.4630.0990.649
obtainEnvironmentPath0.0070.0280.035
setupBasiliskEnv0.0040.0030.007
useBasiliskEnv0.4010.0790.383