Mustafa Erhan Ozer
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-11-20 03:14:02 -0500 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 03:21:41 -0500 (Wed, 20 Nov 2024) |
| EllapsedTime: 458.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 4654,4144,283459,330,3119,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,100128525,350,632,5971,5498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2944,819,29078,11132,148979,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,7295,51119,7466,11131,2559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,4351,284958,350,2713,5255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 161247,10000,2280,1028,406982,80347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90480,91949,5498,51601,5160,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9076,2052,4780,3460,231,2760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7320,1345,55818,100303755,2947,3991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,3767,9507,6464,2820,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,11093,1186,4714,23369,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9969,1524,6833,22796,84342,5092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8660,55753,5286,5901,4853,10165
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,23654,7376,5830,4233,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133,2793,2717,6938,5194,284184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55768,5447,4668,57048,9420,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1374,2740,5601,10560,3091,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,7289,2628,64805,2876,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,3673,84889,3304,7320,9927
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,56729,84987,54931,5080,84274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2056,1859,6928,60528,54968,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2643,3658,4160,1789,644974,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2169,5261,2590,656,407011,8877
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,3551,7057,5445,56945,56923
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,2804,10466,57818,65985,4715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 509,4988,7376,7352,406991,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1056,1071,4728,6721,359,10295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23600,51,942,54802,158,170302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9388,4684,1801,6439,2710,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6183,79661,2542,4915,56606,26003
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8243,50507,55937,3562,7450,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8462,581,5019,2746,84061,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,9507,3952,8560,5444,462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10938,9180,11096,148979,5925,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3141,83854,3988,5091,2055,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,2876,6198,90480,51116,599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,1442,8803,3784,582,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,2950,4713,2110,1716,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 115286,54704,2645,339,821,9388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,5473,10991,123263,1022,2110
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,10580,1728,27125,56848,84706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1471,51241,6868,2184,3978,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,5068,5601,37,51144,788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160287,6938,19,104,563,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8803,84706,51608,768239,407008,5069
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8431,2710,2936,388753,285,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1956,200810,3481,2806,85365,5660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7077,477,3643,54931,9997,406913
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130589,9919,149775,2720,22868,26060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,255308,2169,5192,29078,5139
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,3155,10643,2147,197131,498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200205,3627,348,3240,2495,4319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,790955,5191,54577,1608,410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201305,84239,84705,51119,34,2932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51144,5372,3596,57620,65985,7390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,10616,5009,3295,1352,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3709,10165,2673,2194,5476,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1200,2689,26227,7466,4705,2793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,364,55902,116519,4722,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,574447,5798,54915,952,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4715,55532,308,7038,6901,2697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1489,2778,388372,29968,10724,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7841,29928,153642,1348,5195,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 517,4803,1992,64432,7386,51
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6198,493,496,574447,3308,3034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5293,642489,51103,2697,7057,6898
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2937,51021,7274,2184,440503,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10841,83884,51611,160287,54210,8879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,4358,1588,407004,2875,55753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,5740,55644,10577,1346,1175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6898,3329,7428,3481,10999,51601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1346,256471,10841,694,10753,2632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221935,26003,1909,7376,6382,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11213,5315,56623,2582,2904,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 842,8877,344,2495,64116,1348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,9759,5730,3670,3717,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,885,1281,2638,2592,1029
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3929,4942,5828,538,57761,5365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4232,54704,54896,6564,7295,6382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,55750,1734,124454,1071,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653,23516,7054,10537,5346,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,2806,7275,5239,8932,56259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,5095,5830,50674,6565,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6715,9091,387787,249,3624,10128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26517,123283,6925,5276,4854,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3651,6934,10379,64689,5069,6522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406922,4668,7325,3240,10165,3098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201305,6374,3123,5195,6354,2538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4285,51081,56848,3309,123,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,197131,2524,92609,57104,10842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,4319,594,23590,7124,2876
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5579,9091,4306,8604,7428,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,875,4899,5972,593,1329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,23410,8567,4915,23395,4598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3077,51021,3458,10382,2864,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,11255,1200,5122,5538,84447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,6521,3658,56623,406922,10537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,6571,51300,80222,570,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6748,4314,4697,4089,407021,6716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7879,627,6934,6928,10383,790955
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,6198,1373,8648,4697,409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1950,10094,2804,7084,53905,51608
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3490,5264,6834,10938,3122,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 275,79934,2572,582,151,498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,6262,3670,2903,4149,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 627,583,84557,6696,7084,151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5621,80222,7289,1312,2646,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387,3098,5288,3482,387787,3929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60528,2683,275,145264,211,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4153,1401,54675,29880,2158,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4282,7284,5265,10842,7048,6748
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,54968,122961,4153,2308,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23369,84447,5139,3312,788,23543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 563,2538,3423,1509,6938,583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5191,7037,6476,2864,25828,3081
--> return NULL...
2024-11-20 03:21:34.661 R[57961:461722765] XType: com.apple.fonts is not accessible.
2024-11-20 03:21:34.662 R[57961:461722765] XType: XTFontStaticRegistry is enabled.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
44.967 0.826 45.920
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.612 | 0.028 | 1.102 | |