Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2025-04-22 13:17 -0400 (Tue, 22 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson3macOS 13.7.1 Venturaarm644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1728/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeGSA 1.22.0  (landing page)
Johannes Griss
Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: RELEASE_3_21
git_last_commit: 6e8adbb
git_last_commit_date: 2025-04-15 11:49:59 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for ReactomeGSA on lconway

To the developers/maintainers of the ReactomeGSA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ReactomeGSA
Version: 1.22.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
StartedAt: 2025-04-21 18:07:07 -0400 (Mon, 21 Apr 2025)
EndedAt: 2025-04-21 18:11:34 -0400 (Mon, 21 Apr 2025)
EllapsedTime: 266.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
###
##############################################################################
##############################################################################


* checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK
* preparing ‘ReactomeGSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |=                                                                     |   2%
  |                                                                            
  |===                                                                   |   4%
  |                                                                            
  |====                                                                  |   6%
  |                                                                            
  |=====                                                                 |   8%
  |                                                                            
  |=======                                                               |  10%
  |                                                                            
  |========                                                              |  12%
  |                                                                            
  |=========                                                             |  13%
  |                                                                            
  |===========                                                           |  15%
  |                                                                            
  |============                                                          |  17%
  |                                                                            
  |=============                                                         |  19%
  |                                                                            
  |===============                                                       |  21%
  |                                                                            
  |================                                                      |  23%
  |                                                                            
  |==================                                                    |  25%
  |                                                                            
  |===================                                                   |  27%
  |                                                                            
  |====================                                                  |  29%
  |                                                                            
  |======================                                                |  31%
  |                                                                            
  |=======================                                               |  33%
  |                                                                            
  |========================                                              |  35%
  |                                                                            
  |==========================                                            |  37%
  |                                                                            
  |===========================                                           |  38%
  |                                                                            
  |============================                                          |  40%
  |                                                                            
  |==============================                                        |  42%
  |                                                                            
  |===============================                                       |  44%
  |                                                                            
  |================================                                      |  46%
  |                                                                            
  |==================================                                    |  48%
  |                                                                            
  |===================================                                   |  50%
  |                                                                            
  |====================================                                  |  52%
  |                                                                            
  |======================================                                |  54%
  |                                                                            
  |=======================================                               |  56%
  |                                                                            
  |========================================                              |  58%
  |                                                                            
  |==========================================                            |  60%
  |                                                                            
  |===========================================                           |  62%
  |                                                                            
  |============================================                          |  63%
  |                                                                            
  |==============================================                        |  65%
  |                                                                            
  |===============================================                       |  67%
  |                                                                            
  |================================================                      |  69%
  |                                                                            
  |==================================================                    |  71%
  |                                                                            
  |===================================================                   |  73%
  |                                                                            
  |====================================================                  |  75%
  |                                                                            
  |======================================================                |  77%
  |                                                                            
  |=======================================================               |  79%
  |                                                                            
  |=========================================================             |  81%
  |                                                                            
  |==========================================================            |  83%
  |                                                                            
  |===========================================================           |  85%
  |                                                                            
  |=============================================================         |  87%
  |                                                                            
  |==============================================================        |  88%
  |                                                                            
  |===============================================================       |  90%
  |                                                                            
  |=================================================================     |  92%
  |                                                                            
  |==================================================================    |  94%
  |                                                                            
  |===================================================================   |  96%
  |                                                                            
  |===================================================================== |  98%
  |                                                                            
  |======================================================================| 100%

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |===                                                                   |   4%
  |                                                                            
  |======                                                                |   8%
  |                                                                            
  |=========                                                             |  12%
  |                                                                            
  |============                                                          |  17%
  |                                                                            
  |===============                                                       |  21%
  |                                                                            
  |==================                                                    |  25%
  |                                                                            
  |====================                                                  |  29%
  |                                                                            
  |=======================                                               |  33%
  |                                                                            
  |==========================                                            |  38%
  |                                                                            
  |=============================                                         |  42%
  |                                                                            
  |================================                                      |  46%
  |                                                                            
  |===================================                                   |  50%
  |                                                                            
  |======================================                                |  54%
  |                                                                            
  |=========================================                             |  58%
  |                                                                            
  |============================================                          |  62%
  |                                                                            
  |===============================================                       |  67%
  |                                                                            
  |==================================================                    |  71%
  |                                                                            
  |====================================================                  |  75%
  |                                                                            
  |=======================================================               |  79%
  |                                                                            
  |==========================================================            |  83%
  |                                                                            
  |=============================================================         |  88%
  |                                                                            
  |================================================================      |  92%
  |                                                                            
  |===================================================================   |  96%
  |                                                                            
  |======================================================================| 100%
2025-04-21 18:08:28.696 R[67713:724476461] XType: com.apple.fonts is not accessible.
2025-04-21 18:08:28.696 R[67713:724476461] XType: XTFontStaticRegistry is enabled.
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Analysing single-cell RNAseq data", and the latter is "Analysing single-cell RNA-sequencing Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘analysing-scRNAseq.Rmd’

--- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown

Quitting from reanalysing-public-data.Rmd:89-94 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fetch_public_data()`:
! Request failed (404 - Not Found): Failed to retrieve dataset. Make sure the dataset was successfully loaded beforehand.
---
Backtrace:
    ▆
 1. └─ReactomeGSA::load_public_dataset(dataset_search_entry, verbose = TRUE)
 2.   └─ReactomeGSA:::fetch_public_data(dataset_entry, reactome_url)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'reanalysing-public-data.Rmd' failed with diagnostics:
Request failed (404 - Not Found): Failed to retrieve dataset. Make sure the dataset was successfully loaded beforehand.
--- failed re-building ‘reanalysing-public-data.Rmd’

--- re-building ‘using-reactomegsa.Rmd’ using rmarkdown
--- finished re-building ‘using-reactomegsa.Rmd’

SUMMARY: processing the following file failed:
  ‘reanalysing-public-data.Rmd’

Error: Vignette re-building failed.
Execution halted