Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-22 13:17 -0400 (Tue, 22 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1728/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ReactomeGSA 1.22.0 (landing page) Johannes Griss
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the ReactomeGSA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ReactomeGSA |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA |
StartedAt: 2025-04-21 18:07:07 -0400 (Mon, 21 Apr 2025) |
EndedAt: 2025-04-21 18:11:34 -0400 (Mon, 21 Apr 2025) |
EllapsedTime: 266.3 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA ### ############################################################################## ############################################################################## * checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK * preparing ‘ReactomeGSA’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown | | | 0% | |= | 2% | |=== | 4% | |==== | 6% | |===== | 8% | |======= | 10% | |======== | 12% | |========= | 13% | |=========== | 15% | |============ | 17% | |============= | 19% | |=============== | 21% | |================ | 23% | |================== | 25% | |=================== | 27% | |==================== | 29% | |====================== | 31% | |======================= | 33% | |======================== | 35% | |========================== | 37% | |=========================== | 38% | |============================ | 40% | |============================== | 42% | |=============================== | 44% | |================================ | 46% | |================================== | 48% | |=================================== | 50% | |==================================== | 52% | |====================================== | 54% | |======================================= | 56% | |======================================== | 58% | |========================================== | 60% | |=========================================== | 62% | |============================================ | 63% | |============================================== | 65% | |=============================================== | 67% | |================================================ | 69% | |================================================== | 71% | |=================================================== | 73% | |==================================================== | 75% | |====================================================== | 77% | |======================================================= | 79% | |========================================================= | 81% | |========================================================== | 83% | |=========================================================== | 85% | |============================================================= | 87% | |============================================================== | 88% | |=============================================================== | 90% | |================================================================= | 92% | |================================================================== | 94% | |=================================================================== | 96% | |===================================================================== | 98% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |========= | 12% | |============ | 17% | |=============== | 21% | |================== | 25% | |==================== | 29% | |======================= | 33% | |========================== | 38% | |============================= | 42% | |================================ | 46% | |=================================== | 50% | |====================================== | 54% | |========================================= | 58% | |============================================ | 62% | |=============================================== | 67% | |================================================== | 71% | |==================================================== | 75% | |======================================================= | 79% | |========================================================== | 83% | |============================================================= | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% 2025-04-21 18:08:28.696 R[67713:724476461] XType: com.apple.fonts is not accessible. 2025-04-21 18:08:28.696 R[67713:724476461] XType: XTFontStaticRegistry is enabled. Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Analysing single-cell RNAseq data", and the latter is "Analysing single-cell RNA-sequencing Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘analysing-scRNAseq.Rmd’ --- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown Quitting from reanalysing-public-data.Rmd:89-94 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `fetch_public_data()`: ! Request failed (404 - Not Found): Failed to retrieve dataset. Make sure the dataset was successfully loaded beforehand. --- Backtrace: ▆ 1. └─ReactomeGSA::load_public_dataset(dataset_search_entry, verbose = TRUE) 2. └─ReactomeGSA:::fetch_public_data(dataset_entry, reactome_url) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'reanalysing-public-data.Rmd' failed with diagnostics: Request failed (404 - Not Found): Failed to retrieve dataset. Make sure the dataset was successfully loaded beforehand. --- failed re-building ‘reanalysing-public-data.Rmd’ --- re-building ‘using-reactomegsa.Rmd’ using rmarkdown --- finished re-building ‘using-reactomegsa.Rmd’ SUMMARY: processing the following file failed: ‘reanalysing-public-data.Rmd’ Error: Vignette re-building failed. Execution halted