Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1075/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IWTomics 1.30.0 (landing page) Marzia A Cremona
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the IWTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IWTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: IWTomics |
Version: 1.30.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:IWTomics.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings IWTomics_1.30.0.tar.gz |
StartedAt: 2024-11-20 09:13:22 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 09:18:47 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 325.6 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: IWTomics.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:IWTomics.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings IWTomics_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/IWTomics.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IWTomics/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IWTomics’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IWTomics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Problems with news in ‘NEWS’: Cannot process chunk/lines: 0.99.0 First submission Cannot process chunk/lines: 0.99.11 Revised package Cannot process chunk/lines: 0.99.12 Fixed bug in plotTest and plotSummary Cannot process chunk/lines: 1.1.1 Fixed bug in IWTomicsTest statistics=variance Cannot process chunk/lines: 1.1.2 Fixed alpha Cannot process chunk/lines: 1.1.3 Fixed bug in IWTomicsData constructor Cannot process chunk/lines: 1.3.3 Citation added * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (-1) IWTomicsData-class.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:74: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:75-76: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:87-88: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:89-91: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:92: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:93-94: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:95-96: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:97-101: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:102: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:103-106: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:108-109: Lost braces in \itemize; meant \describe ? checkRd: (5) IWTomicsData-class.Rd:122-126: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:127-170: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:177-179: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:180-182: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:183-186: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:187-189: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:190-193: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:194-196: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:197-200: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:201-204: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:205-208: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:209-211: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:212-214: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:215-217: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:218-220: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:221-223: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:224-226: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:227-229: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:230-234: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:235-237: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:238-248: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:256-261: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:269-274: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:275-280: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:281-286: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:292-299: \item in \describe must have non-empty label * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed IWTomicsTest 90.599 1.197 92.118 IWTomics-package 18.889 0.550 19.495 plotSummary 15.627 0.240 15.900 IWTomicsData-class 14.429 0.092 14.566 plotTest 8.756 0.132 8.907 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.20-bioc/meat/IWTomics.Rcheck/00check.log’ for details.
IWTomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL IWTomics ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘IWTomics’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘IWTomics’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IWTomics)
IWTomics.Rcheck/IWTomics-Ex.timings
name | user | system | elapsed | |
ETn_example | 0.774 | 0.036 | 0.812 | |
IWTomics-package | 18.889 | 0.550 | 19.495 | |
IWTomicsData-class | 14.429 | 0.092 | 14.566 | |
IWTomicsTest | 90.599 | 1.197 | 92.118 | |
features_example | 0.002 | 0.000 | 0.002 | |
plot-IWTomicsData | 0.560 | 0.020 | 0.585 | |
plotSummary | 15.627 | 0.240 | 15.900 | |
plotTest | 8.756 | 0.132 | 8.907 | |
regionsFeatures_center | 0.01 | 0.00 | 0.01 | |
regionsFeatures_scale | 0.010 | 0.000 | 0.009 | |
regions_example | 0.002 | 0.000 | 0.001 | |
smooth-IWTomicsData | 1.728 | 0.008 | 1.740 | |