Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1075/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IWTomics 1.30.0 (landing page) Marzia A Cremona
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
To the developers/maintainers of the IWTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IWTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: IWTomics |
Version: 1.30.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:IWTomics.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings IWTomics_1.30.0.tar.gz |
StartedAt: 2024-12-20 05:08:57 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 05:16:48 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 470.5 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: IWTomics.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:IWTomics.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings IWTomics_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/IWTomics.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IWTomics/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IWTomics’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IWTomics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Problems with news in ‘NEWS’: Cannot process chunk/lines: 0.99.0 First submission Cannot process chunk/lines: 0.99.11 Revised package Cannot process chunk/lines: 0.99.12 Fixed bug in plotTest and plotSummary Cannot process chunk/lines: 1.1.1 Fixed bug in IWTomicsTest statistics=variance Cannot process chunk/lines: 1.1.2 Fixed alpha Cannot process chunk/lines: 1.1.3 Fixed bug in IWTomicsData constructor Cannot process chunk/lines: 1.3.3 Citation added * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (-1) IWTomicsData-class.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:74: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:75-76: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:78-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:87-88: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:89-91: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:92: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:93-94: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:95-96: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:97-101: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:102: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:103-106: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) IWTomicsData-class.Rd:108-109: Lost braces in \itemize; meant \describe ? checkRd: (5) IWTomicsData-class.Rd:122-126: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:127-170: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:177-179: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:180-182: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:183-186: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:187-189: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:190-193: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:194-196: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:197-200: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:201-204: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:205-208: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:209-211: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:212-214: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:215-217: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:218-220: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:221-223: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:224-226: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:227-229: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:230-234: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:235-237: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:238-248: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:256-261: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:269-274: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:275-280: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:281-286: \item in \describe must have non-empty label checkRd: (5) IWTomicsData-class.Rd:292-299: \item in \describe must have non-empty label * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed IWTomicsTest 146.999 1.915 155.301 IWTomicsData-class 25.350 0.141 25.887 IWTomics-package 16.241 1.552 18.286 plotSummary 10.196 0.863 12.048 plotTest 7.235 0.466 8.565 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc/meat/IWTomics.Rcheck/00check.log’ for details.
IWTomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL IWTomics ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘IWTomics’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘IWTomics’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IWTomics)
IWTomics.Rcheck/IWTomics-Ex.timings
name | user | system | elapsed | |
ETn_example | 0.804 | 0.020 | 0.829 | |
IWTomics-package | 16.241 | 1.552 | 18.286 | |
IWTomicsData-class | 25.350 | 0.141 | 25.887 | |
IWTomicsTest | 146.999 | 1.915 | 155.301 | |
features_example | 0.003 | 0.003 | 0.005 | |
plot-IWTomicsData | 0.928 | 0.049 | 1.065 | |
plotSummary | 10.196 | 0.863 | 12.048 | |
plotTest | 7.235 | 0.466 | 8.565 | |
regionsFeatures_center | 0.016 | 0.003 | 0.024 | |
regionsFeatures_scale | 0.016 | 0.004 | 0.023 | |
regions_example | 0.002 | 0.003 | 0.005 | |
smooth-IWTomicsData | 3.078 | 0.102 | 3.472 | |