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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 963/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 2.0.0  (landing page)
Zuguang Gu
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/HilbertCurve
git_branch: RELEASE_3_20
git_last_commit: 072be7d
git_last_commit_date: 2024-10-29 10:02:42 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for HilbertCurve on nebbiolo2

To the developers/maintainers of the HilbertCurve package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HilbertCurve
Version: 2.0.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings HilbertCurve_2.0.0.tar.gz
StartedAt: 2024-12-20 01:03:59 -0500 (Fri, 20 Dec 2024)
EndedAt: 2024-12-20 01:09:23 -0500 (Fri, 20 Dec 2024)
EllapsedTime: 324.2 seconds
RetCode: 0
Status:   OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings HilbertCurve_2.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/HilbertCurve.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
hc_layer-HilbertCurve-method        7.598  0.104   7.702
hc_layer-GenomicHilbertCurve-method 6.430  0.246   6.677
GenomicHilbertCurve                 5.876  0.271   6.523
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/HilbertCurve.Rcheck/00check.log’
for details.


Installation output

HilbertCurve.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL HilbertCurve
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c std_hilbert_curve.cpp -o std_hilbert_curve.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c std_utils.cpp -o std_utils.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o HilbertCurve.so RcppExports.o std_hilbert_curve.o std_utils.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-HilbertCurve/00new/HilbertCurve/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
  2.936   0.244   3.165 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class000
GenomicHilbertCurve5.8760.2716.523
HilbertCurve-class000
HilbertCurve0.4890.0230.511
default_overlay000
hc_centered_text-HilbertCurve-method0.1010.0010.102
hc_layer-GenomicHilbertCurve-method6.4300.2466.677
hc_layer-HilbertCurve-method7.5980.1047.702
hc_layer-dispatch000
hc_level-HilbertCurve-method0.0340.0000.034
hc_map-GenomicHilbertCurve-method2.4610.0022.462
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method0.0140.0000.014
hc_png-HilbertCurve-method2.3390.0302.369
hc_points-GenomicHilbertCurve-method0.2910.0010.292
hc_points-HilbertCurve-method0.4510.0040.455
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.3180.0020.320
hc_polygon-HilbertCurve-method0.0860.0020.088
hc_polygon-dispatch000
hc_rect-GenomicHilbertCurve-method0.2300.0010.232
hc_rect-HilbertCurve-method0.070.000.07
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method000
hc_segments-GenomicHilbertCurve-method0.3950.0020.397
hc_segments-HilbertCurve-method0.0740.0000.074
hc_segments-dispatch0.0010.0000.000
hc_text-GenomicHilbertCurve-method0.1890.0030.193
hc_text-HilbertCurve-method0.0510.0040.055
hc_text-dispatch000
hc_which-GenomicHilbertCurve-method000
hc_which-HilbertCurve-method000
hc_which-dispatch0.0000.0000.001
is_white000
show-HilbertCurve-method0.0120.0000.013
unzoom-HilbertCurve-method0.0110.0000.012
zoom-HilbertCurve-method0.0110.0000.012