Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 963/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HilbertCurve 2.0.0 (landing page) Zuguang Gu
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HilbertCurve package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HilbertCurve |
Version: 2.0.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HilbertCurve_2.0.0.tar.gz |
StartedAt: 2024-12-20 22:08:58 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 22:11:05 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 127.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HilbertCurve.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HilbertCurve_2.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HilbertCurve.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HilbertCurve/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HilbertCurve’ version ‘2.0.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HilbertCurve’ can be installed ... OK * used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hc_layer-HilbertCurve-method 8.131 0.441 8.576 hc_layer-GenomicHilbertCurve-method 7.172 0.155 7.337 GenomicHilbertCurve 5.363 0.102 5.945 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test-all.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc/meat/HilbertCurve.Rcheck/00check.log’ for details.
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HilbertCurve’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c std_hilbert_curve.cpp -o std_hilbert_curve.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c std_utils.cpp -o std_utils.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o HilbertCurve.so RcppExports.o std_hilbert_curve.o std_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-HilbertCurve/00new/HilbertCurve/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve))) > > test_check("HilbertCurve") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ] > > proc.time() user system elapsed 3.975 0.233 4.212
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
name | user | system | elapsed | |
GenomicHilbertCurve-class | 0 | 0 | 0 | |
GenomicHilbertCurve | 5.363 | 0.102 | 5.945 | |
HilbertCurve-class | 0 | 0 | 0 | |
HilbertCurve | 0.607 | 0.035 | 0.644 | |
default_overlay | 0 | 0 | 0 | |
hc_centered_text-HilbertCurve-method | 0.106 | 0.002 | 0.108 | |
hc_layer-GenomicHilbertCurve-method | 7.172 | 0.155 | 7.337 | |
hc_layer-HilbertCurve-method | 8.131 | 0.441 | 8.576 | |
hc_layer-dispatch | 0 | 0 | 0 | |
hc_level-HilbertCurve-method | 0.046 | 0.002 | 0.048 | |
hc_map-GenomicHilbertCurve-method | 2.707 | 0.075 | 2.784 | |
hc_normal_points-HilbertCurve-method | 0.000 | 0.000 | 0.001 | |
hc_offset-HilbertCurve-method | 0.022 | 0.001 | 0.023 | |
hc_png-HilbertCurve-method | 2.641 | 0.147 | 2.798 | |
hc_points-GenomicHilbertCurve-method | 0.396 | 0.029 | 0.425 | |
hc_points-HilbertCurve-method | 0.881 | 0.032 | 0.916 | |
hc_points-dispatch | 0 | 0 | 0 | |
hc_polygon-GenomicHilbertCurve-method | 0.365 | 0.014 | 0.379 | |
hc_polygon-HilbertCurve-method | 0.104 | 0.006 | 0.110 | |
hc_polygon-dispatch | 0 | 0 | 0 | |
hc_rect-GenomicHilbertCurve-method | 0.283 | 0.011 | 0.293 | |
hc_rect-HilbertCurve-method | 0.085 | 0.006 | 0.091 | |
hc_rect-dispatch | 0.000 | 0.000 | 0.001 | |
hc_segmented_points-HilbertCurve-method | 0.000 | 0.000 | 0.001 | |
hc_segments-GenomicHilbertCurve-method | 0.440 | 0.011 | 0.451 | |
hc_segments-HilbertCurve-method | 0.090 | 0.005 | 0.096 | |
hc_segments-dispatch | 0 | 0 | 0 | |
hc_text-GenomicHilbertCurve-method | 0.235 | 0.010 | 0.245 | |
hc_text-HilbertCurve-method | 0.077 | 0.006 | 0.083 | |
hc_text-dispatch | 0 | 0 | 0 | |
hc_which-GenomicHilbertCurve-method | 0 | 0 | 0 | |
hc_which-HilbertCurve-method | 0 | 0 | 0 | |
hc_which-dispatch | 0 | 0 | 0 | |
is_white | 0 | 0 | 0 | |
show-HilbertCurve-method | 0.015 | 0.001 | 0.016 | |
unzoom-HilbertCurve-method | 0.013 | 0.001 | 0.014 | |
zoom-HilbertCurve-method | 0.014 | 0.001 | 0.015 | |