Back to Books build report for BioC 3.23

This page was generated on 2025-11-10 14:30 -0500 (Mon, 10 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4821
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2/11HostnameOS / ArchINSTALLBUILDCHECK
csawBook 1.19.0  (landing page)
Aaron Lun
Snapshot Date: 2025-11-10 06:30 -0500 (Mon, 10 Nov 2025)
git_url: https://git.bioconductor.org/packages/csawBook
git_branch: devel
git_last_commit: 8f3f934
git_last_commit_date: 2025-10-29 10:12:51 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped


INSTALL results for csawBook on nebbiolo1

To the developers/maintainers of the csawBook package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: csawBook
Version: 1.19.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL csawBook
StartedAt: 2025-11-10 10:15:17 -0500 (Mon, 10 Nov 2025)
EndedAt: 2025-11-10 10:15:28 -0500 (Mon, 10 Nov 2025)
EllapsedTime: 11.0 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL csawBook
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘csawBook’ ...
** this is package ‘csawBook’ version ‘1.19.0’
** using staged installation
** inst
** help
No man pages found in package  ‘csawBook’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘ChIPpeakAnno’:
 object ‘microRNAs’ is not exported by 'namespace:GenomicFeatures'
Error : package ‘ChIPpeakAnno’ could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/csawBook’