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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data trigger
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* checking for file ‘trigger/DESCRIPTION’ ... OK
* preparing ‘trigger’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘trigger’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c trigger.c -o trigger.o
trigger.c: In function ‘mergeorder’:
trigger.c:25:20: warning: variable ‘n3’ set but not used [-Wunused-but-set-variable]
25 | int i1,i2,i3,n1,n2,n3;
| ^~
trigger.c: In function ‘order_c’:
trigger.c:54:8: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
54 | p = Calloc(*n, double*);
| ^~~~~~
| calloc
trigger.c:54:19: error: expected expression before ‘double’
54 | p = Calloc(*n, double*);
| ^~~~~~
trigger.c:60:4: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
60 | Free(p);
| ^~~~
| free
trigger.c: In function ‘sec_link_stat’:
trigger.c:89:18: error: expected expression before ‘int’
89 | ll = Calloc(*ng, int);
| ^~~
trigger.c:90:18: error: expected expression before ‘double’
90 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:91:18: error: expected expression before ‘double’
91 | mc = Calloc(*ng, double);
| ^~~~~~
trigger.c:92:18: error: expected expression before ‘double’
92 | xc = Calloc(*ng, double);
| ^~~~~~
trigger.c:93:18: error: expected expression before ‘double’
93 | xx = Calloc(*ng, double);
| ^~~~~~
trigger.c:94:18: error: expected expression before ‘double’
94 | cc = Calloc(*ng, double);
| ^~~~~~
trigger.c:81:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
81 | int ntr, nct, i, j;
| ^~~
trigger.c: In function ‘sec_link_stat_x’:
trigger.c:160:18: error: expected expression before ‘int’
160 | ll = Calloc(*ng, int);
| ^~~
trigger.c:161:18: error: expected expression before ‘double’
161 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:162:18: error: expected expression before ‘double’
162 | mc = Calloc(*ng, double);
| ^~~~~~
trigger.c:163:18: error: expected expression before ‘double’
163 | xc = Calloc(*ng, double);
| ^~~~~~
trigger.c:164:18: error: expected expression before ‘double’
164 | xx = Calloc(*ng, double);
| ^~~~~~
trigger.c:165:18: error: expected expression before ‘double’
165 | cc = Calloc(*ng, double);
| ^~~~~~
trigger.c:153:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
153 | int ntr, nct, i, j, k, nk;
| ^~~
trigger.c: In function ‘condi_indep_stat’:
trigger.c:244:18: error: expected expression before ‘int’
244 | ll = Calloc(*ng, int);
| ^~~
trigger.c:245:18: error: expected expression before ‘double’
245 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:246:18: error: expected expression before ‘double’
246 | mc = Calloc(*ng, double);
| ^~~~~~
trigger.c:247:18: error: expected expression before ‘double’
247 | xc = Calloc(*ng, double);
| ^~~~~~
trigger.c:248:18: error: expected expression before ‘double’
248 | xx = Calloc(*ng, double);
| ^~~~~~
trigger.c:249:18: error: expected expression before ‘double’
249 | cc = Calloc(*ng, double);
| ^~~~~~
trigger.c:233:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
233 | int ntr, nct, i, j;
| ^~~
trigger.c: In function ‘condi_indep_stat_x’:
trigger.c:323:18: error: expected expression before ‘int’
323 | ll = Calloc(*ng, int);
| ^~~
trigger.c:324:18: error: expected expression before ‘double’
324 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:325:18: error: expected expression before ‘double’
325 | mc = Calloc(*ng, double);
| ^~~~~~
trigger.c:326:18: error: expected expression before ‘double’
326 | xc = Calloc(*ng, double);
| ^~~~~~
trigger.c:327:18: error: expected expression before ‘double’
327 | xx = Calloc(*ng, double);
| ^~~~~~
trigger.c:328:18: error: expected expression before ‘double’
328 | cc = Calloc(*ng, double);
| ^~~~~~
trigger.c:310:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
310 | int ntr, nct, i, j, k, nk;
| ^~~
trigger.c: In function ‘condi_indep_stat_rx’:
trigger.c:406:18: error: expected expression before ‘int’
406 | ll = Calloc(*ng, int);
| ^~~
trigger.c:407:18: error: expected expression before ‘double’
407 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:408:18: error: expected expression before ‘double’
408 | mc = Calloc(*ng, double);
| ^~~~~~
trigger.c:409:18: error: expected expression before ‘double’
409 | xc = Calloc(*ng, double);
| ^~~~~~
trigger.c:410:18: error: expected expression before ‘double’
410 | xx = Calloc(*ng, double);
| ^~~~~~
trigger.c:411:18: error: expected expression before ‘double’
411 | cc = Calloc(*ng, double);
| ^~~~~~
trigger.c:393:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
393 | int ntr, nct, i, j, k, nk;
| ^~~
trigger.c: In function ‘link_stat’:
trigger.c:483:18: error: expected expression before ‘int’
483 | ll = Calloc(*ng, int);
| ^~~
trigger.c:484:18: error: expected expression before ‘double’
484 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:485:18: error: expected expression before ‘double’
485 | xs = Calloc(*ng, double);
| ^~~~~~
trigger.c: In function ‘link_stat_xx’:
trigger.c:548:18: error: expected expression before ‘int’
548 | ll = Calloc(*ng, int);
| ^~~
trigger.c:549:18: error: expected expression before ‘double’
549 | mx = Calloc(*ng, double);
| ^~~~~~
trigger.c:550:18: error: expected expression before ‘double’
550 | xs = Calloc(*ng, double);
| ^~~~~~
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: trigger.o] Error 1
ERROR: compilation failed for package ‘trigger’
* removing ‘/tmp/RtmpAiarlp/Rinst1585be543e7aee/trigger’
-----------------------------------
ERROR: package installation failed
