Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-23 11:47 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4372 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2181/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
trigger 1.53.0 (landing page) John D. Storey
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the trigger package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trigger.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: trigger |
Version: 1.53.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL trigger |
StartedAt: 2024-12-22 20:40:10 -0000 (Sun, 22 Dec 2024) |
EndedAt: 2024-12-22 20:40:11 -0000 (Sun, 22 Dec 2024) |
EllapsedTime: 0.6 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL trigger ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘trigger’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c trigger.c -o trigger.o trigger.c: In function ‘mergeorder’: trigger.c:25:20: warning: variable ‘n3’ set but not used [-Wunused-but-set-variable] 25 | int i1,i2,i3,n1,n2,n3; | ^~ trigger.c: In function ‘order_c’: trigger.c:54:8: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 54 | p = Calloc(*n, double*); | ^~~~~~ | calloc trigger.c:54:19: error: expected expression before ‘double’ 54 | p = Calloc(*n, double*); | ^~~~~~ trigger.c:60:4: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 60 | Free(p); | ^~~~ | free trigger.c: In function ‘sec_link_stat’: trigger.c:89:18: error: expected expression before ‘int’ 89 | ll = Calloc(*ng, int); | ^~~ trigger.c:90:18: error: expected expression before ‘double’ 90 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:91:18: error: expected expression before ‘double’ 91 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:92:18: error: expected expression before ‘double’ 92 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:93:18: error: expected expression before ‘double’ 93 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:94:18: error: expected expression before ‘double’ 94 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c:81:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 81 | int ntr, nct, i, j; | ^~~ trigger.c: In function ‘sec_link_stat_x’: trigger.c:160:18: error: expected expression before ‘int’ 160 | ll = Calloc(*ng, int); | ^~~ trigger.c:161:18: error: expected expression before ‘double’ 161 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:162:18: error: expected expression before ‘double’ 162 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:163:18: error: expected expression before ‘double’ 163 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:164:18: error: expected expression before ‘double’ 164 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:165:18: error: expected expression before ‘double’ 165 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c:153:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 153 | int ntr, nct, i, j, k, nk; | ^~~ trigger.c: In function ‘condi_indep_stat’: trigger.c:244:18: error: expected expression before ‘int’ 244 | ll = Calloc(*ng, int); | ^~~ trigger.c:245:18: error: expected expression before ‘double’ 245 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:246:18: error: expected expression before ‘double’ 246 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:247:18: error: expected expression before ‘double’ 247 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:248:18: error: expected expression before ‘double’ 248 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:249:18: error: expected expression before ‘double’ 249 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c:233:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 233 | int ntr, nct, i, j; | ^~~ trigger.c: In function ‘condi_indep_stat_x’: trigger.c:323:18: error: expected expression before ‘int’ 323 | ll = Calloc(*ng, int); | ^~~ trigger.c:324:18: error: expected expression before ‘double’ 324 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:325:18: error: expected expression before ‘double’ 325 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:326:18: error: expected expression before ‘double’ 326 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:327:18: error: expected expression before ‘double’ 327 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:328:18: error: expected expression before ‘double’ 328 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c:310:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 310 | int ntr, nct, i, j, k, nk; | ^~~ trigger.c: In function ‘condi_indep_stat_rx’: trigger.c:406:18: error: expected expression before ‘int’ 406 | ll = Calloc(*ng, int); | ^~~ trigger.c:407:18: error: expected expression before ‘double’ 407 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:408:18: error: expected expression before ‘double’ 408 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:409:18: error: expected expression before ‘double’ 409 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:410:18: error: expected expression before ‘double’ 410 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:411:18: error: expected expression before ‘double’ 411 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c:393:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 393 | int ntr, nct, i, j, k, nk; | ^~~ trigger.c: In function ‘link_stat’: trigger.c:483:18: error: expected expression before ‘int’ 483 | ll = Calloc(*ng, int); | ^~~ trigger.c:484:18: error: expected expression before ‘double’ 484 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:485:18: error: expected expression before ‘double’ 485 | xs = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘link_stat_xx’: trigger.c:548:18: error: expected expression before ‘int’ 548 | ll = Calloc(*ng, int); | ^~~ trigger.c:549:18: error: expected expression before ‘double’ 549 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:550:18: error: expected expression before ‘double’ 550 | xs = Calloc(*ng, double); | ^~~~~~ make: *** [/home/biocbuild/R/R/etc/Makeconf:195: trigger.o] Error 1 ERROR: compilation failed for package ‘trigger’ * removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/trigger’