| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-19 12:05 -0400 (Tue, 19 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4596 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4538 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4536 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1315/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mobileRNA 1.5.1 (landing page) Katie Jeynes-Cupper
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mobileRNA |
| Version: 1.5.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.5.1.tar.gz |
| StartedAt: 2025-08-18 22:35:52 -0400 (Mon, 18 Aug 2025) |
| EndedAt: 2025-08-18 22:41:21 -0400 (Mon, 18 Aug 2025) |
| EllapsedTime: 328.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mobileRNA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.5.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/mobileRNA.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 24 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
RNAdistribution 11.919 0.064 12.033
RNAsubset 11.907 0.061 12.032
RNAdicercall 11.191 0.139 11.360
RNAdifferentialAnalysis 8.033 0.181 8.248
RNAsummary 5.700 0.090 5.820
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘mobileRNA’ ... ** this is package ‘mobileRNA’ version ‘1.5.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
| name | user | system | elapsed | |
| RNAattributes | 1.398 | 0.026 | 1.433 | |
| RNAdf2se | 0.277 | 0.005 | 0.284 | |
| RNAdicercall | 11.191 | 0.139 | 11.360 | |
| RNAdifferentialAnalysis | 8.033 | 0.181 | 8.248 | |
| RNAdistribution | 11.919 | 0.064 | 12.033 | |
| RNAfeatures | 1.269 | 0.010 | 1.287 | |
| RNAimport | 0.000 | 0.000 | 0.001 | |
| RNAmergeAnnotations | 0.276 | 0.006 | 0.283 | |
| RNAmergeGenomes | 0.047 | 0.003 | 0.050 | |
| RNAmobile | 0.705 | 0.034 | 0.746 | |
| RNApopulation | 1.937 | 0.024 | 1.968 | |
| RNAreorder | 0.151 | 0.002 | 0.154 | |
| RNAsequences | 1.472 | 0.018 | 1.496 | |
| RNAsubset | 11.907 | 0.061 | 12.032 | |
| RNAsummary | 5.70 | 0.09 | 5.82 | |
| mRNA_data | 0.028 | 0.002 | 0.030 | |
| mapRNA | 0.000 | 0.001 | 0.001 | |
| plotHeatmap | 0.717 | 0.008 | 0.729 | |
| plotRNAfeatures | 1.236 | 0.011 | 1.257 | |
| plotSampleDistance | 3.796 | 0.052 | 3.871 | |
| plotSamplePCA | 4.240 | 0.060 | 4.325 | |
| sRNA_data | 0.149 | 0.002 | 0.152 | |