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This page was generated on 2024-10-24 11:04 -0400 (Thu, 24 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 3656
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1251/2281HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
microbiomeMarker 1.11.1  (landing page)
Yang Cao
Snapshot Date: 2024-10-23 19:16 -0400 (Wed, 23 Oct 2024)
git_url: https://git.bioconductor.org/packages/microbiomeMarker
git_branch: devel
git_last_commit: aee056c
git_last_commit_date: 2024-08-21 14:56:00 -0400 (Wed, 21 Aug 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for microbiomeMarker on nebbiolo1

To the developers/maintainers of the microbiomeMarker package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microbiomeMarker.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: microbiomeMarker
Version: 1.11.1
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data microbiomeMarker
StartedAt: 2024-10-24 04:55:14 -0400 (Thu, 24 Oct 2024)
EndedAt: 2024-10-24 04:56:45 -0400 (Thu, 24 Oct 2024)
EllapsedTime: 91.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data microbiomeMarker
###
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* checking for file ‘microbiomeMarker/DESCRIPTION’ ... OK
* preparing ‘microbiomeMarker’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘microbiomeMarker-vignette.Rmd’ using rmarkdown
Error: segfault from C stack overflow

Quitting from lines 347-371 [edger] (microbiomeMarker-vignette.Rmd)
Execution halted