"James F. Reid"
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/microRNA |
| git_branch: devel |
| git_last_commit: fcc2f78 |
| git_last_commit_date: 2024-10-29 09:30:02 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:45 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1250/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| microRNA 1.65.0 (landing page) "James F. Reid"
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | ERROR | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | OK | ERROR | ERROR | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | OK | ERROR | ||||||||||
|
To the developers/maintainers of the microRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: microRNA |
| Version: 1.65.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:microRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings microRNA_1.65.0.tar.gz |
| StartedAt: 2024-12-23 20:10:55 -0500 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 20:10:59 -0500 (Mon, 23 Dec 2024) |
| EllapsedTime: 4.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: microRNA.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:microRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings microRNA_1.65.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/microRNA.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘microRNA/DESCRIPTION’ ... OK
* this is package ‘microRNA’ version ‘1.65.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘microRNA’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/microRNA.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.21-bioc/meat/microRNA.Rcheck/00check.log’
for details.
microRNA.Rcheck/00install.out
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###
### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL microRNA
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘microRNA’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp:87:35: error: use of undeclared identifier 'mkCharLen'; did you mean 'Rf_mkCharLen'?
SET_STRING_ELT(result, i, mkCharLen(found[i], lcs_len));
^~~~~~~~~
Rf_mkCharLen
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:563:6: note: 'Rf_mkCharLen' declared here
SEXP Rf_mkCharLen(const char *, int);
^
1 error generated.
make: *** [longest_common_substring.o] Error 1
ERROR: compilation failed for package ‘microRNA’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/microRNA’