Multiple platform build/check report for BioC 3.21 - BUILD BIN results for microRNA on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4754
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4472
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4426
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4381
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4372
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD BIN results for microRNA on kjohnson3

To the developers/maintainers of the microRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: microRNA

Version: 1.65.0

Command: rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh microRNA_1.65.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R microRNA.buildbin-libdir

StartedAt: 2024-12-22 22:36:41 -0500 (Sun, 22 Dec 2024)

EndedAt: 2024-12-22 22:36:42 -0500 (Sun, 22 Dec 2024)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh microRNA_1.65.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R microRNA.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=microRNA.buildbin-libdir microRNA_1.65.0.tar.gz'
>>>>>>> 

* installing *source* package ‘microRNA’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp:87:35: error: use of undeclared identifier 'mkCharLen'; did you mean 'Rf_mkCharLen'?
        SET_STRING_ELT(result, i, mkCharLen(found[i], lcs_len));
                                  ^~~~~~~~~
                                  Rf_mkCharLen
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:563:6: note: 'Rf_mkCharLen' declared here
SEXP Rf_mkCharLen(const char *, int);
     ^
1 error generated.
make: *** [longest_common_substring.o] Error 1
ERROR: compilation failed for package ‘microRNA’
* removing ‘/Users/biocbuild/bbs-3.21-bioc/meat/microRNA.buildbin-libdir/microRNA’