Multiple platform build/check report for BioC 3.21 - BUILD results for knowYourCG on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4609
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4393
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3839
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3835
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4408
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for knowYourCG on lconway

To the developers/maintainers of the knowYourCG package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/knowYourCG.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: knowYourCG

Version: 1.3.15

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data knowYourCG

StartedAt: 2025-01-23 16:37:04 -0500 (Thu, 23 Jan 2025)

EndedAt: 2025-01-23 16:39:13 -0500 (Thu, 23 Jan 2025)

EllapsedTime: 129.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data knowYourCG
###
##############################################################################
##############################################################################


* checking for file ‘knowYourCG/DESCRIPTION’ ... OK
* preparing ‘knowYourCG’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Array.Rmd’ using rmarkdown
--- finished re-building ‘Array.Rmd’

--- re-building ‘Continuous.Rmd’ using rmarkdown

Quitting from lines 67-73 [ky23] (Continuous.Rmd)
Error: processing vignette 'Continuous.Rmd' failed with diagnostics:
there is no package called 'sesame'
--- failed re-building ‘Continuous.Rmd’

--- re-building ‘Sequencing.Rmd’ using rmarkdown
trying URL 'https://github.com/zhou-lab/KYCGKB_mm10/raw/refs/heads/main/ChromHMM.20220414.cm'
Content type 'application/octet-stream' length 877986 bytes (857 KB)
==================================================
downloaded 857 KB

trying URL 'https://github.com/zhou-lab/YAME/raw/refs/heads/main/test/input/single_cell_10_samples.cg'
Content type 'application/octet-stream' length 11610328 bytes (11.1 MB)
==================================================
downloaded 11.1 MB

2025-01-23 16:39:07.811 R[50266:980730889] XType: com.apple.fonts is not accessible.
2025-01-23 16:39:07.811 R[50266:980730889] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘Sequencing.Rmd’

SUMMARY: processing the following file failed:
  ‘Continuous.Rmd’

Error: Vignette re-building failed.
Execution halted