Yongchao Ge
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/flowPeaks |
| git_branch: devel |
| git_last_commit: 8974c0d |
| git_last_commit_date: 2024-11-21 14:58:37 -0500 (Thu, 21 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:41 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 732/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowPeaks 1.53.2 (landing page) Yongchao Ge
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the flowPeaks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowPeaks |
| Version: 1.53.2 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL flowPeaks |
| StartedAt: 2024-12-23 15:16:53 -0500 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 15:19:29 -0500 (Mon, 23 Dec 2024) |
| EllapsedTime: 156.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL flowPeaks
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"E:/biocbuild/bbs-3.21-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 2.4
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:25: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
141 | if(levels.size()<(i+1)){
| ~~~~~~~~~~~~~^~~~~~
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o
g++ -std=gnu++17 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-flowPeaks/00new/flowPeaks/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowPeaks)