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This page was generated on 2024-12-23 11:47 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4372
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 732/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.53.2  (landing page)
Yongchao Ge
Snapshot Date: 2024-12-22 13:40 -0500 (Sun, 22 Dec 2024)
git_url: https://git.bioconductor.org/packages/flowPeaks
git_branch: devel
git_last_commit: 8974c0d
git_last_commit_date: 2024-11-21 14:58:37 -0500 (Thu, 21 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


INSTALL results for flowPeaks on kunpeng2

To the developers/maintainers of the flowPeaks package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: flowPeaks
Version: 1.53.2
Command: /home/biocbuild/R/R/bin/R CMD INSTALL flowPeaks
StartedAt: 2024-12-22 19:41:31 -0000 (Sun, 22 Dec 2024)
EndedAt: 2024-12-22 19:41:54 -0000 (Sun, 22 Dec 2024)
EllapsedTime: 23.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL flowPeaks
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘flowPeaks’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function ‘void Rpack_relevel(int*, int*, int*, int*, int*, int*)’:
Rpack.cpp:141:25: warning: comparison of integer expressions of different signedness: ‘std::map<int, int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  141 |         if(levels.size()<(i+1)){
      |            ~~~~~~~~~~~~~^~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c Rregistrate.cpp -o Rregistrate.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c flowPeaks.cpp -o flowPeaks.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c func_collect.cpp -o func_collect.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c func_collect_supp.cpp -o func_collect_supp.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c gvector_gmatrix.cpp -o gvector_gmatrix.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c kd_tree.cpp -o kd_tree.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c kmns.cpp -o kmns.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -lm -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-flowPeaks/00new/flowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowPeaks)