Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-11-28 12:15 -0500 (Thu, 28 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4398 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 702/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
fenr 1.5.0 (landing page) Marek Gierlinski
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the fenr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fenr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: fenr |
Version: 1.5.0 |
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fenr.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings fenr_1.5.0.tar.gz |
StartedAt: 2024-11-28 00:31:23 -0500 (Thu, 28 Nov 2024) |
EndedAt: 2024-11-28 00:37:21 -0500 (Thu, 28 Nov 2024) |
EllapsedTime: 357.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: fenr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fenr.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings fenr_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/fenr.Rcheck' * using R Under development (unstable) (2024-10-26 r87273 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'fenr/DESCRIPTION' ... OK * this is package 'fenr' version '1.5.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fenr' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fetch_go 27.48 1.20 45.89 fetch_reactome 6.31 0.67 8.02 fetch_wiki 0.19 0.00 6.56 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
fenr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL fenr ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'fenr' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fenr)
fenr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(fenr) > > test_check("fenr") [ FAIL 0 | WARN 0 | SKIP 1 | PASS 320 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test_bp.R:9:1' [ FAIL 0 | WARN 0 | SKIP 1 | PASS 320 ] > > proc.time() user system elapsed 46.46 3.70 240.95
fenr.Rcheck/fenr-Ex.timings
name | user | system | elapsed | |
enrichment_interactive | 0 | 0 | 0 | |
fetch_bp | 0.25 | 0.10 | 0.44 | |
fetch_go | 27.48 | 1.20 | 45.89 | |
fetch_go_species | 0.03 | 0.00 | 0.05 | |
fetch_kegg | 0.74 | 0.02 | 3.75 | |
fetch_kegg_species | 0.28 | 0.00 | 3.07 | |
fetch_reactome | 6.31 | 0.67 | 8.02 | |
fetch_reactome_species | 0.03 | 0.00 | 0.33 | |
fetch_terms_for_example | 0 | 0 | 0 | |
fetch_wiki | 0.19 | 0.00 | 6.56 | |
fetch_wiki_species | 0.03 | 0.00 | 0.08 | |
functional_enrichment | 0 | 0 | 0 | |
get_feature_terms | 0 | 0 | 0 | |
get_term_features | 0 | 0 | 0 | |
prepare_for_enrichment | 0 | 0 | 0 | |
remove_cache | 0 | 0 | 0 | |