Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:38 -0500 (Mon, 25 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 643/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
enrichViewNet 1.5.0 (landing page) Astrid DeschĂȘnes
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the enrichViewNet package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/enrichViewNet.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: enrichViewNet |
Version: 1.5.0 |
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:enrichViewNet.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings enrichViewNet_1.5.0.tar.gz |
StartedAt: 2024-11-25 00:27:03 -0500 (Mon, 25 Nov 2024) |
EndedAt: 2024-11-25 00:31:08 -0500 (Mon, 25 Nov 2024) |
EllapsedTime: 245.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: enrichViewNet.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:enrichViewNet.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings enrichViewNet_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/enrichViewNet.Rcheck' * using R Under development (unstable) (2024-10-26 r87273 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'enrichViewNet/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'enrichViewNet' version '1.5.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'enrichViewNet' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed extractInformationWhenNoIntersection 0.29 0.01 12.44 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
enrichViewNet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL enrichViewNet ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'enrichViewNet' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (enrichViewNet)
enrichViewNet.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(enrichViewNet) > > ## Run all unit tests > test_check("enrichViewNet") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 103 ] > > proc.time() user system elapsed 11.29 1.03 20.53
enrichViewNet.Rcheck/enrichViewNet-Ex.timings
name | user | system | elapsed | |
createBasicEmap | 1.11 | 0.07 | 1.17 | |
createCXJSONForCytoscape | 0.11 | 0.03 | 0.14 | |
createEnrichMap | 0.71 | 0.00 | 0.70 | |
createEnrichMapMultiBasic | 1.61 | 0.01 | 1.64 | |
createEnrichMapMultiComplex | 1.21 | 0.03 | 1.25 | |
createMetaDataSectionCXJSON | 0 | 0 | 0 | |
createMultiEmap | 1.02 | 0.03 | 1.05 | |
createNetwork | 0.09 | 0.00 | 2.14 | |
createNetworkForCytoscape | 0.04 | 0.00 | 2.08 | |
demoGOST | 0.01 | 0.04 | 2.86 | |
extractInformationWhenIntersection | 0.05 | 0.00 | 0.04 | |
extractInformationWhenNoIntersection | 0.29 | 0.01 | 12.44 | |
extractNodesAndEdgesInformation | 0.05 | 0.00 | 0.05 | |
filterResults | 0 | 0 | 0 | |
formatInformationForCXJSON | 0.05 | 0.02 | 0.06 | |
isCytoscapeRunning | 0.0 | 0.0 | 2.1 | |
manageNameDuplicationInEmap | 0 | 0 | 0 | |
manageQueryDuplicationInEmap | 0 | 0 | 0 | |
parentalNapaVsDMSODEG | 0.30 | 0.00 | 3.29 | |
parentalNapaVsDMSOEnrichment | 0.39 | 0.01 | 0.41 | |
removeRootTerm | 0.01 | 0.00 | 0.01 | |
rosaNapaVsDMSODEG | 0.17 | 0.00 | 3.49 | |
rosaNapaVsDMSOEnrichment | 0.36 | 0.02 | 0.37 | |
validateCreateEnrichMapArguments | 0 | 0 | 0 | |
validateCreateEnrichMapMultiArguments | 0.00 | 0.01 | 0.02 | |
validateCreateEnrichMapMultiComplexArg | 0.01 | 0.00 | 0.02 | |
validateCreateEnrichMapSubSectionArguments | 0 | 0 | 0 | |
validateCreateNetworkArguments | 0 | 0 | 0 | |