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This page was generated on 2024-11-25 11:39 -0500 (Mon, 25 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4459
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4349
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 502/2272HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dce 1.15.0  (landing page)
Kim Philipp Jablonski
Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024)
git_url: https://git.bioconductor.org/packages/dce
git_branch: devel
git_last_commit: ba5ee3f
git_last_commit_date: 2024-10-29 10:56:17 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped

BUILD results for dce on lconway

To the developers/maintainers of the dce package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dce.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: dce
Version: 1.15.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dce
StartedAt: 2024-11-24 16:29:51 -0500 (Sun, 24 Nov 2024)
EndedAt: 2024-11-24 16:33:05 -0500 (Sun, 24 Nov 2024)
EllapsedTime: 194.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dce
###
##############################################################################
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* checking for file ‘dce/DESCRIPTION’ ... OK
* preparing ‘dce’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dce.Rmd’ using rmarkdown
2024-11-24 16:31:03.831 R[67124:478017712] XType: com.apple.fonts is not accessible.
2024-11-24 16:31:03.833 R[67124:478017712] XType: XTFontStaticRegistry is enabled.
INFO [2024-11-24 16:32:22] Processing kegg

Quitting from lines 242-243 [unnamed-chunk-16] (dce.Rmd)
Error: processing vignette 'dce.Rmd' failed with diagnostics:
Not all nodes have expression vector in WT data
--- failed re-building ‘dce.Rmd’

--- re-building ‘pathway_databases.Rmd’ using rmarkdown
INFO [2024-11-24 16:32:34] Processing pathbank
INFO [2024-11-24 16:32:56] Processing kegg
--- finished re-building ‘pathway_databases.Rmd’

SUMMARY: processing the following file failed:
  ‘dce.Rmd’

Error: Vignette re-building failed.
Execution halted