Multiple platform build/check report for BioC 3.21 - BUILD results for dce on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4748
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4459
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4398
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for dce on palomino7

To the developers/maintainers of the dce package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dce.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: dce

Version: 1.15.0

Command: chmod a+r dce -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dce

StartedAt: 2024-11-27 17:56:24 -0500 (Wed, 27 Nov 2024)

EndedAt: 2024-11-27 18:00:30 -0500 (Wed, 27 Nov 2024)

EllapsedTime: 246.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r dce -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dce
###
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* checking for file 'dce/DESCRIPTION' ... OK
* preparing 'dce':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'dce.Rmd' using rmarkdown
INFO [2024-11-27 18:00:00] Processing kegg

Quitting from lines 242-243 [unnamed-chunk-16] (dce.Rmd)
Error: processing vignette 'dce.Rmd' failed with diagnostics:
Not all nodes have expression vector in WT data
--- failed re-building 'dce.Rmd'

--- re-building 'pathway_databases.Rmd' using rmarkdown
INFO [2024-11-27 18:00:08] Processing pathbank
INFO [2024-11-27 18:00:22] Processing kegg
--- finished re-building 'pathway_databases.Rmd'

SUMMARY: processing the following file failed:
  'dce.Rmd'

Error: Vignette re-building failed.
Execution halted