Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-16 12:04 -0400 (Sat, 16 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4596 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4538 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 487/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.17.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.17.0.tar.gz |
StartedAt: 2025-08-15 20:10:13 -0400 (Fri, 15 Aug 2025) |
EndedAt: 2025-08-15 20:12:04 -0400 (Fri, 15 Aug 2025) |
EllapsedTime: 111.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 11.383 0.629 9.505 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 0.821 | 0.075 | 0.906 | |
PhytoFilter | 0.673 | 0.045 | 0.729 | |
PhytopFilter | 0.697 | 0.054 | 0.760 | |
accTest | 0.471 | 0.032 | 0.507 | |
accuracy | 0.432 | 0.024 | 0.459 | |
cellmargin | 0.359 | 0.029 | 0.392 | |
clusterExtract | 0.904 | 0.039 | 0.950 | |
clusterExtractp | 0.925 | 0.041 | 0.976 | |
debrisNc | 0.588 | 0.048 | 0.644 | |
fullFlowframe-MarginEvents-method | 0.348 | 0.030 | 0.384 | |
fullFlowframe-PhytopFilter-method | 0.720 | 0.051 | 0.783 | |
fullFlowframe | 0.379 | 0.038 | 0.423 | |
gateFunc | 11.383 | 0.629 | 9.505 | |
ggpairsDens | 3.674 | 0.131 | 3.824 | |
ggplotDens | 0.565 | 0.027 | 0.596 | |
ggplotDens2 | 0.887 | 0.039 | 0.933 | |
goodfcs | 0.062 | 0.010 | 0.072 | |
is.DebrisFilter | 0 | 0 | 0 | |
is.MarginEvents | 0 | 0 | 0 | |
is.PhytopFilter | 0.000 | 0.000 | 0.001 | |
is.flowFrame | 0.000 | 0.000 | 0.001 | |
is.flowSet | 0.001 | 0.000 | 0.000 | |
lnTrans | 0.269 | 0.019 | 0.290 | |
newFlowframe | 0.234 | 0.058 | 0.296 | |
nona | 0.118 | 0.008 | 0.126 | |
noneg | 0.180 | 0.009 | 0.192 | |
oneDgate | 0.238 | 0.052 | 0.295 | |
pairsPlot | 1.940 | 0.163 | 2.123 | |
pigmentGate | 0.284 | 0.050 | 0.339 | |
reducedFlowframe-MarginEvents-method | 0.313 | 0.023 | 0.340 | |
reducedFlowframe | 0.337 | 0.030 | 0.371 | |
retain | 0.023 | 0.002 | 0.025 | |
rowNumbers | 0.222 | 0.054 | 0.279 | |
summaries-DebrisFilter-method | 0.337 | 0.029 | 0.373 | |
summaries-MarginEvents-method | 0.343 | 0.021 | 0.368 | |
summaries-PhytopFilter-method | 0.673 | 0.040 | 0.722 | |
summaries | 0.322 | 0.023 | 0.348 | |