| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-01-24 11:39 -0500 (Fri, 24 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4609 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4393 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3839 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3835 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 459/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| crlmm 1.65.0 (landing page) Benilton S Carvalho
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the crlmm package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crlmm.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: crlmm |
| Version: 1.65.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL crlmm |
| StartedAt: 2025-01-23 16:39:39 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 16:39:43 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 3.7 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL crlmm
###
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'crlmm' ...
** this is package 'crlmm' version '1.65.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/preprocessCore/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gtypeCaller.c -o gtypeCaller.o
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/preprocessCore/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/preprocessCore/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c trimmed.c -o trimmed.o
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/preprocessCore/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
utils.c: In function 'trimmed_mean':
utils.c:56:18: warning: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration]
56 | double *buffer=Calloc(n, double);
| ^~~~~~
| calloc
utils.c:56:28: error: expected expression before 'double'
56 | double *buffer=Calloc(n, double);
| ^~~~~~
utils.c:77:3: warning: implicit declaration of function 'Free'; did you mean 'free'? [-Wimplicit-function-declaration]
77 | Free(buffer);
| ^~~~
| free
utils.c: In function 'trimmed_stats':
utils.c:82:30: error: expected expression before 'double'
82 | double *datvec=Calloc(cols,double);
| ^~~~~~
utils.c:83:29: error: expected expression before 'int'
83 | int *classvec=Calloc(cols,int);
| ^~~
utils.c: In function 'median':
utils.c:119:34: error: expected expression before 'double'
119 | double *buffer = Calloc(length,double);
| ^~~~~~
utils.c: In function 'mad_median':
utils.c:141:28: error: expected expression before 'double'
141 | double *buffer=Calloc(n, double);
| ^~~~~~
utils.c: In function 'mad_stats':
utils.c:208:30: error: expected expression before 'double'
208 | double *datvec=Calloc(cols,double);
| ^~~~~~
utils.c:209:29: error: expected expression before 'int'
209 | int *classvec=Calloc(cols,int);
| ^~~
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:289: utils.o] Error 1
ERROR: compilation failed for package 'crlmm'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/crlmm'