Benilton S Carvalho
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/crlmm |
| git_branch: devel |
| git_last_commit: de849d9 |
| git_last_commit_date: 2024-10-29 09:31:05 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 457/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| crlmm 1.65.0 (landing page) Benilton S Carvalho
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the crlmm package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crlmm.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: crlmm |
| Version: 1.65.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data crlmm |
| StartedAt: 2024-12-23 22:10:38 -0000 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 22:10:40 -0000 (Mon, 23 Dec 2024) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data crlmm
###
##############################################################################
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* checking for file ‘crlmm/DESCRIPTION’ ... OK
* preparing ‘crlmm’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘crlmm’ ...
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c gtypeCaller.c -o gtypeCaller.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c init.c -o init.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c trimmed.c -o trimmed.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c utils.c -o utils.o
utils.c: In function ‘trimmed_mean’:
utils.c:56:18: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
56 | double *buffer=Calloc(n, double);
| ^~~~~~
| calloc
utils.c:56:28: error: expected expression before ‘double’
56 | double *buffer=Calloc(n, double);
| ^~~~~~
utils.c:77:3: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
77 | Free(buffer);
| ^~~~
| free
utils.c: In function ‘trimmed_stats’:
utils.c:82:30: error: expected expression before ‘double’
82 | double *datvec=Calloc(cols,double);
| ^~~~~~
utils.c:83:29: error: expected expression before ‘int’
83 | int *classvec=Calloc(cols,int);
| ^~~
utils.c: In function ‘median’:
utils.c:119:34: error: expected expression before ‘double’
119 | double *buffer = Calloc(length,double);
| ^~~~~~
utils.c: In function ‘mad_median’:
utils.c:141:28: error: expected expression before ‘double’
141 | double *buffer=Calloc(n, double);
| ^~~~~~
utils.c: In function ‘mad_stats’:
utils.c:208:30: error: expected expression before ‘double’
208 | double *datvec=Calloc(cols,double);
| ^~~~~~
utils.c:209:29: error: expected expression before ‘int’
209 | int *classvec=Calloc(cols,int);
| ^~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:195: utils.o] Error 1
ERROR: compilation failed for package ‘crlmm’
* removing ‘/home/biocbuild/tmp/Rtmpop0X4B/Rinst2c9e7b1860e491/crlmm’
-----------------------------------
ERROR: package installation failed