Andreas Mitterecker
| Snapshot Date: 2026-03-20 13:40 -0400 (Fri, 20 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/cn.farms |
| git_branch: devel |
| git_last_commit: cd33296 |
| git_last_commit_date: 2025-10-29 10:07:06 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 399/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cn.farms 1.59.0 (landing page) Andreas Mitterecker
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ERROR | |||||||||
| See other builds for cn.farms in R Universe. | ||||||||||||||
|
To the developers/maintainers of the cn.farms package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cn.farms.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cn.farms |
| Version: 1.59.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cn.farms |
| StartedAt: 2026-03-20 18:12:08 -0400 (Fri, 20 Mar 2026) |
| EndedAt: 2026-03-20 18:12:22 -0400 (Fri, 20 Mar 2026) |
| EllapsedTime: 14.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cn.farms
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘cn.farms’ ...
** this is package ‘cn.farms’ version ‘1.59.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_cnfarms.c -o R_init_cnfarms.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c laplace.cpp -o laplace.o
laplace.cpp:275:10: warning: variable 'I1left' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
laplace.cpp:364:36: note: uninitialized use occurs here
364 | double I2left=(-leftMy/leftSigma)*I1left+I0left;
| ^~~~~~
laplace.cpp:275:7: note: remove the 'if' if its condition is always true
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
laplace.cpp:275:10: warning: variable 'I1left' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~
laplace.cpp:364:36: note: uninitialized use occurs here
364 | double I2left=(-leftMy/leftSigma)*I1left+I0left;
| ^~~~~~
laplace.cpp:275:10: note: remove the '&&' if its condition is always true
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~~~~
laplace.cpp:198:15: note: initialize the variable 'I1left' to silence this warning
198 | double I1left;
| ^
| = 0.0
laplace.cpp:275:10: warning: variable 'I1right' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
laplace.cpp:365:39: note: uninitialized use occurs here
365 | double I2right=(-rightMy/rightSigma)*I1right+I0right;
| ^~~~~~~
laplace.cpp:275:7: note: remove the 'if' if its condition is always true
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
laplace.cpp:275:10: warning: variable 'I1right' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized]
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~
laplace.cpp:365:39: note: uninitialized use occurs here
365 | double I2right=(-rightMy/rightSigma)*I1right+I0right;
| ^~~~~~~
laplace.cpp:275:10: note: remove the '&&' if its condition is always true
275 | else if(argLeft >= 0.0 && argRight >= 0.0) {
| ^~~~~~~~~~~~~~~~~
laplace.cpp:199:16: note: initialize the variable 'I1right' to silence this warning
199 | double I1right;
| ^
| = 0.0
laplace.cpp:442:6: warning: unused variable 'method' [-Wunused-variable]
442 | int method=0;
| ^~~~~~
laplace.cpp:23:11: warning: unused variable 'steps' [-Wunused-const-variable]
23 | const int steps=30;
| ^~~~~
laplace.cpp:26:14: warning: unused variable 'integrationFailureFactor' [-Wunused-const-variable]
26 | const double integrationFailureFactor=5.0;
| ^~~~~~~~~~~~~~~~~~~~~~~~
laplace.cpp:27:14: warning: unused variable 'sigmaFactor' [-Wunused-const-variable]
27 | const double sigmaFactor=0.1;
| ^~~~~~~~~~~
laplace.cpp:30:14: warning: unused variable 'Pi' [-Wunused-const-variable]
30 | const double Pi=M_PI;
| ^~
laplace.cpp:31:14: warning: unused variable 'E' [-Wunused-const-variable]
31 | const double E=M_E;
| ^
laplace.cpp:34:14: warning: unused variable 'sqrt3' [-Wunused-const-variable]
34 | const double sqrt3=1.7320508075688772935274463415058723669428052538104;
| ^~~~~
laplace.cpp:35:14: warning: unused variable 'sqrt2Pi' [-Wunused-const-variable]
35 | const double sqrt2Pi=2.5066282746310005024157652848110452530069867406099;
| ^~~~~~~
12 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sparse_farms.c -o sparse_farms.o
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o cn.farms.so R_init_cnfarms.o laplace.o sparse_farms.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-cn.farms/00new/cn.farms/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cn.farms)