Andrew McCluskey
| Snapshot Date: 2026-02-27 13:40 -0500 (Fri, 27 Feb 2026) |
| git_url: https://git.bioconductor.org/packages/blase |
| git_branch: devel |
| git_last_commit: c3e30a8 |
| git_last_commit_date: 2026-02-13 09:46:01 -0500 (Fri, 13 Feb 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-28 11:35 -0500 (Sat, 28 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4877 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 232/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| blase 1.1.2 (landing page) Andrew McCluskey
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for blase in R Universe. | ||||||||||||||
|
To the developers/maintainers of the blase package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/blase.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: blase |
| Version: 1.1.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data blase |
| StartedAt: 2026-02-27 15:46:08 -0500 (Fri, 27 Feb 2026) |
| EndedAt: 2026-02-27 15:46:39 -0500 (Fri, 27 Feb 2026) |
| EllapsedTime: 31.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data blase
###
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* checking for file ‘blase/DESCRIPTION’ ... OK
* preparing ‘blase’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BLASE-for-annotating-scRNA-seq.Rmd’ using rmarkdown
2026-02-27 15:46:30.905 R[6465:40248740] XType: Using static font registry.
Quitting from BLASE-for-annotating-scRNA-seq.Rmd:102-118 [calculate_gene_peakedness]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `reducer$value.cache[[as.character(idx)]] <- values`:
! wrong args for environment subassignment
---
Backtrace:
▆
1. └─blase::calculate_gene_peakedness(...)
2. ├─BiocParallel::bplapply(...)
3. └─BiocParallel::bplapply(...)
4. └─BiocParallel:::.bpinit(...)
5. ├─BiocParallel::bploop(...)
6. └─BiocParallel:::bploop.lapply(...)
7. └─BiocParallel:::.bploop_impl(...)
8. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
9. ├─BiocParallel:::.reducer_add(reducer, njob, value)
10. └─BiocParallel:::.reducer_add(reducer, njob, value)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BLASE-for-annotating-scRNA-seq.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘BLASE-for-annotating-scRNA-seq.Rmd’
--- re-building ‘BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmppSXHdW/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmppSXHdW/BiocStyle/template.html': No such file or directory
Error: processing vignette 'BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd’
--- re-building ‘assign-bulk-to-pseudotime.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmppSXHdW/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmppSXHdW/BiocStyle/template.html': No such file or directory
Error: processing vignette 'assign-bulk-to-pseudotime.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘assign-bulk-to-pseudotime.Rmd’
SUMMARY: processing the following files failed:
‘BLASE-for-annotating-scRNA-seq.Rmd’
‘BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd’
‘assign-bulk-to-pseudotime.Rmd’
Error: Vignette re-building failed.
Execution halted