Pierrick Roger
| Snapshot Date: 2025-02-16 13:40 -0500 (Sun, 16 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: devel |
| git_last_commit: 686a27c |
| git_last_commit_date: 2024-10-29 11:04:36 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-17 11:41 -0500 (Mon, 17 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4720 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4482 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4493 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4446 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.13.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.13.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbChebi_1.13.0.tar.gz |
| StartedAt: 2025-02-16 22:55:28 -0500 (Sun, 16 Feb 2025) |
| EndedAt: 2025-02-16 23:01:09 -0500 (Sun, 16 Feb 2025) |
| EllapsedTime: 340.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbChebi_1.13.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbChebi.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 3.23 1.8 86.47
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'biodbChebi' ... ** this is package 'biodbChebi' version '1.13.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-02-16 22:59:55.035][biodb::testContext]
biodb.INFO [2025-02-16 22:59:55.038][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 22:59:55.039][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-02-16 22:59:55.041][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 22:59:55.042][biodb::testContext]
biodb.INFO [2025-02-16 22:59:55.049][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-16 22:59:55.052][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-16 22:59:55.060][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 22:59:55.062][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-16 22:59:55.063][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-16 22:59:55.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.069][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-16 22:59:55.088][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-16 22:59:55.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.106][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-16 22:59:55.107][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-16 22:59:55.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.111][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-16 22:59:55.112][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-16 22:59:55.114][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-16 22:59:55.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.118][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-16 22:59:55.119][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-16 22:59:55.120][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-16 22:59:55.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.125][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-16 22:59:55.126][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-16 22:59:55.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.130][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-16 22:59:55.131][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-16 22:59:55.133][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-16 22:59:55.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.137][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-16 22:59:55.138][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-16 22:59:55.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.144][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-16 22:59:55.146][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-16 22:59:55.148][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-16 22:59:55.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.154][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-16 22:59:55.156][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-16 22:59:55.158][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-16 22:59:55.160][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-16 22:59:55.162][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-16 22:59:55.164][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-16 22:59:55.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.171][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-16 22:59:55.173][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-16 22:59:55.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.180][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-16 22:59:55.182][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-16 22:59:55.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.189][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-16 22:59:55.191][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-16 22:59:55.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.198][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-16 22:59:55.200][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-16 22:59:55.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.207][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-16 22:59:55.209][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-16 22:59:55.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.216][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-16 22:59:55.218][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-16 22:59:55.223][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-16 22:59:55.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.230][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-16 22:59:55.232][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-16 22:59:55.234][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-16 22:59:55.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.245][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-16 22:59:55.280][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.294][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-16 22:59:55.295][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.296][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 22:59:55.298][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.299][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.300][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.301][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.302][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 22:59:55.304][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 22:59:55.305][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.306][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-16 22:59:55.307][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 22:59:55.308][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.310][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.311][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 22:59:55.311][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 22:59:55.311][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 22:59:55.311][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 22:59:55.311][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 22:59:55.312][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 22:59:55.313][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.316][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 22:59:55.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.319][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.320][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.321][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 22:59:55.323][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 22:59:55.324][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.325][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.326][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-16 22:59:55.328][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.330][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 22:59:55.331][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.332][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 22:59:55.333][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.334][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.336][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.337][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.338][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 22:59:55.339][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 22:59:55.340][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.342][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-16 22:59:55.343][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 22:59:55.344][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.345][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.346][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 22:59:55.346][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 22:59:55.346][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 22:59:55.346][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 22:59:55.346][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 22:59:55.348][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 22:59:55.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.351][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 22:59:55.352][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.354][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.355][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.356][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.358][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 22:59:55.359][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 22:59:55.367][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.368][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.370][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-16 22:59:55.372][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.373][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-16 22:59:55.374][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.375][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 22:59:55.377][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.378][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.379][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.380][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.382][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 22:59:55.383][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 22:59:55.384][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.386][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-16 22:59:55.387][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 22:59:55.388][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.389][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.391][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.392][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 22:59:55.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.397][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 22:59:55.399][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.403][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.404][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.406][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 22:59:55.408][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 22:59:55.409][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.411][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.413][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-16 22:59:55.416][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.418][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 22:59:55.420][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.421][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 22:59:55.423][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.425][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.427][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.429][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.430][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 22:59:55.432][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 22:59:55.435][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.437][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-16 22:59:55.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 22:59:55.440][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.441][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.442][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.443][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 22:59:55.445][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.446][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.447][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 22:59:55.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:55.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:55.450][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.451][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.452][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 22:59:55.454][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 22:59:55.455][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.456][self$setPropertyValue]
biodb.DEBUG[2025-02-16 22:59:55.459][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 22:59:55.461][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.556][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-16 22:59:55.560][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-16 22:59:55.562][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-16 22:59:55.563][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-16 22:59:55.565][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 22:59:55.567][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-16 22:59:55.568][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-16 22:59:55.570][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-16 22:59:55.571][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-16 22:59:55.573][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-16 22:59:55.574][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 22:59:55.576][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-16 22:59:55.577][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-16 22:59:55.579][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-16 22:59:55.580][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-16 22:59:55.582][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-16 22:59:55.583][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-16 22:59:55.585][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-16 22:59:55.586][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 22:59:55.588][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-16 22:59:55.590][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-16 22:59:55.591][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-16 22:59:55.593][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-16 22:59:55.594][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-16 22:59:55.596][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-16 22:59:55.597][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-16 22:59:55.599][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-16 22:59:55.600][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-16 22:59:55.602][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-16 22:59:55.603][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-16 22:59:55.605][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-16 22:59:55.607][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-16 22:59:55.608][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-16 22:59:55.617][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-16 22:59:55.620][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-16 22:59:55.622][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-16 22:59:55.624][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-16 22:59:55.627][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-16 22:59:55.629][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-16 22:59:55.632][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-16 22:59:55.634][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-16 22:59:55.636][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-16 22:59:55.639][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-16 22:59:55.641][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-16 22:59:55.644][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-16 22:59:55.646][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-16 22:59:55.648][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-16 22:59:55.651][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-16 22:59:55.653][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-16 22:59:55.656][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-16 22:59:55.658][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-16 22:59:55.661][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-16 22:59:55.663][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-16 22:59:55.665][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-16 22:59:55.668][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-16 22:59:55.670][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-16 22:59:55.673][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-16 22:59:55.675][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-16 22:59:55.677][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-16 22:59:55.680][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-16 22:59:55.682][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-16 22:59:55.685][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-16 22:59:55.687][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-16 22:59:55.689][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-16 22:59:55.692][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-16 22:59:55.694][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-16 22:59:55.697][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 22:59:55.699][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 22:59:55.702][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-16 22:59:55.704][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-16 22:59:55.706][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-16 22:59:55.709][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-16 22:59:55.711][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-16 22:59:55.714][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-16 22:59:55.716][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-16 22:59:55.718][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-16 22:59:55.721][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-16 22:59:55.723][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-16 22:59:55.726][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-16 22:59:55.728][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-16 22:59:55.731][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-16 22:59:55.733][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-16 22:59:55.735][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-16 22:59:55.770][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-16 22:59:55.774][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-16 22:59:55.779][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 22:59:55.780][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.784][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 22:59:55.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:55.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:55.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:55.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:55.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:55.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 22:59:55.982][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-02-16 22:59:55.992][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-02-16 22:59:55.994][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:55.995][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-16 22:59:55.997][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:55.998][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 22:59:55.999][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:56.000][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 22:59:56.001][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:56.003][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-02-16 22:59:56.004][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-16 22:59:56.005][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 22:59:56.006][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:56.007][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-02-16 22:59:56.008][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-02-16 22:59:56.010][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-02-16 22:59:56.011][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-16 22:59:56.012][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 22:59:56.012][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 22:59:56.012][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 22:59:56.014][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-16 22:59:56.015][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:56.016][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:56.017][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 22:59:56.018][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 22:59:56.019][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 22:59:56.020][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 22:59:56.021][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 22:59:56.021][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-02-16 22:59:56.023][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 22:59:56.024][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 22:59:56.025][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-16 22:59:56.026][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-02-16 22:59:56.026][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-02-16 22:59:56.032][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 22:59:56.033][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 22:59:56.035][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-02-16 22:59:56.037][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 22:59:56.038][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 22:59:56.040][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 22:59:56.062][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-02-16 22:59:56.063][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-02-16 22:59:56.067][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-02-16 22:59:56.071][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-02-16 22:59:56.075][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 22:59:56.076][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 22:59:56.078][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-02-16 22:59:56.079][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-02-16 22:59:56.094][biodb::testThat]
biodb.INFO [2025-02-16 22:59:56.095][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-02-16 22:59:56.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:56.097][biodb::testThat]
biodb.TRACE[2025-02-16 22:59:56.136][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-02-16 22:59:56.139][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 22:59:56.142][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 22:59:56.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 22:59:56.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:56.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:56.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:56.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:56.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:56.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 22:59:56.180][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.208][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.291][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:56.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:56.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:56.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:56.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:56.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:56.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.356][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 22:59:56.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 22:59:56.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.386][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.396][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 22:59:56.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:56.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.400][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 22:59:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:56.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:56.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:56.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:56.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 22:59:56.496][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-02-16 22:59:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:56.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-16 22:59:56.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-16 22:59:56.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-16 22:59:56.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-16 22:59:56.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-16 22:59:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-16 22:59:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-16 22:59:56.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-16 22:59:56.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:56.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.828][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.864][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:56.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.984][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.022][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.209][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:57.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:57.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.257][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:57.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:57.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:57.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:57.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:57.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:57.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.361][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.372][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:57.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:57.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.383][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.384][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.387][ef$get] fields variable is a list.
biodb.INFO [2025-02-16 22:59:57.401][biodb::testThat]
biodb.INFO [2025-02-16 22:59:57.402][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-16 22:59:57.404][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:57.405][biodb::testThat]
biodb.DEBUG[2025-02-16 22:59:57.418][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-02-16 22:59:57.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 22:59:57.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2025-02-16 22:59:57.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 22:59:57.435][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2025-02-16 22:59:57.437][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 22:59:57.464][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 22:59:57.465][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 22:59:57.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 22:59:57.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 22:59:57.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 22:59:57.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 22:59:57.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 22:59:57.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 22:59:57.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 22:59:57.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.513][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:57.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:57.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 22:59:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 22:59:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.525][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:57.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 22:59:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 22:59:57.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:57.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:57.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.573][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 22:59:57.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.587][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 22:59:57.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:57.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 22:59:57.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:57.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:57.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:57.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:57.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:57.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:57.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 22:59:57.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 22:59:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 22:59:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.643][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 22:59:57.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 22:59:57.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:57.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 22:59:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 22:59:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 22:59:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 22:59:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 22:59:57.705][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-02-16 22:59:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-16 22:59:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-16 22:59:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-16 22:59:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-16 22:59:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-16 22:59:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-16 22:59:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-16 22:59:57.747][biodb::testThat]
biodb.INFO [2025-02-16 22:59:57.748][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-16 22:59:57.750][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:57.751][biodb::testThat]
biodb.TRACE[2025-02-16 22:59:57.754][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:57.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:57.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:57.758][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-16 22:59:57.760][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-02-16 22:59:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 22:59:58.085][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-02-16 22:59:58.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-02-16 22:59:58.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 22:59:58.128][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-02-16 22:59:58.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 22:59:58.133][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-02-16 22:59:58.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 22:59:58.159][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 22:59:58.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 22:59:58.162][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 22:59:58.178][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-02-16 22:59:58.181][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-02-16 22:59:58.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:58.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 22:59:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.208][ef$get] fields variable is a list.
biodb.INFO [2025-02-16 22:59:58.215][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.216][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-02-16 22:59:58.218][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:58.219][biodb::testThat]
biodb.TRACE[2025-02-16 22:59:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 22:59:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 22:59:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 22:59:58.317][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 22:59:58.321][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 22:59:58.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 22:59:58.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 22:59:58.327][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-02-16 22:59:58.374][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.375][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-02-16 22:59:58.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:58.378][biodb::testThat]
biodb.TRACE[2025-02-16 22:59:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:58.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:58.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-16 22:59:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-16 22:59:58.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-16 22:59:58.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-16 22:59:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:58.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 22:59:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 22:59:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 22:59:58.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 22:59:58.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-16 22:59:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-16 22:59:58.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-16 22:59:58.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 22:59:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-16 22:59:58.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-16 22:59:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 22:59:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-16 22:59:58.579][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.580][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-16 22:59:58.582][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:58.583][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.600][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.601][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-16 22:59:58.603][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:58.604][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.625][biodb::testThat]
biodb.INFO [2025-02-16 22:59:58.627][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-16 22:59:58.629][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 22:59:58.630][biodb::testThat]
biodb.DEBUG[2025-02-16 22:59:58.638][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-02-16 23:00:01.174][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-02-16 23:00:04.608][biodb::testThat]
biodb.INFO [2025-02-16 23:00:04.610][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-16 23:00:04.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:04.612][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:06.337][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-02-16 23:00:13.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:13.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:13.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:13.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:13.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.326][ef$get] fields variable is a list.
biodb.INFO [2025-02-16 23:00:13.328][biodb::testThat]
biodb.INFO [2025-02-16 23:00:13.329][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-02-16 23:00:13.330][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:13.331][biodb::testThat]
biodb.TRACE[2025-02-16 23:00:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:13.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:13.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:13.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:13.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:13.475][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:13.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 23:00:13.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:13.481][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-02-16 23:00:13.551][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:13.555][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:13.557][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 23:00:13.558][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:13.561][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-02-16 23:00:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-16 23:00:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-16 23:00:13.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:13.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:13.643][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:13.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-02-16 23:00:13.648][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:13.692][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-02-16 23:00:13.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:13.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:13.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:13.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:13.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:13.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:13.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:13.714][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-02-16 23:00:13.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:13.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-02-16 23:00:13.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:13.785][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-02-16 23:00:13.787][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:13.789][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:13.792][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:13.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:13.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:13.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:13.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:13.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:13.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:13.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:13.815][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.825][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:13.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:13.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:13.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:13.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.835][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:13.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:13.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:13.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:13.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:13.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:13.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:13.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.870][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:13.871][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:13.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.875][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:13.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.880][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:13.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:13.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:13.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.895][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:13.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:13.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:13.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:13.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:13.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:13.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:13.973][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-02-16 23:00:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:13.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:13.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:13.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:14.006][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:14.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-02-16 23:00:14.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:14.024][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-02-16 23:00:14.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:14.117][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-02-16 23:00:14.118][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:14.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-02-16 23:00:14.122][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:14.138][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-02-16 23:00:14.140][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:14.142][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:14.143][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:14.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:14.165][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.175][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:14.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:14.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.186][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:14.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:14.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:14.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:14.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:14.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:14.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:14.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:14.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:14.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.225][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.227][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:14.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:14.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:14.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:14.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.274][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:14.276][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:14.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:14.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:14.292][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:14.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.366][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-02-16 23:00:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:14.443][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:14.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 23:00:14.447][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:14.449][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-02-16 23:00:14.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:14.497][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-02-16 23:00:14.499][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:14.500][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-02-16 23:00:14.503][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:14.520][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2025-02-16 23:00:14.522][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:14.523][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:14.525][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:14.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:14.543][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.553][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:14.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:14.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:14.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:14.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:14.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:14.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.573][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:14.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.583][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:14.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.593][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:14.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:14.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:14.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:14.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:14.615][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:14.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.695][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-02-16 23:00:14.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:14.753][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-02-16 23:00:14.754][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:14.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-02-16 23:00:14.758][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:14.774][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2025-02-16 23:00:14.776][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:14.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:14.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:14.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:14.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:14.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.821][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:14.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:14.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:14.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.829][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:14.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.835][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:14.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:14.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.840][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:14.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:14.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.850][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:14.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:14.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.861][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:14.862][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:14.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:14.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:14.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:14.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.931][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-02-16 23:00:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:14.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:14.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:14.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:14.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:14.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:14.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:14.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:14.975][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-02-16 23:00:14.977][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:14.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-02-16 23:00:14.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:14.997][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2025-02-16 23:00:14.999][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:15.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:15.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:15.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:15.034][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.052][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.084][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:15.216][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-02-16 23:00:15.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:15.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:15.260][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-02-16 23:00:15.262][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:15.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-02-16 23:00:15.265][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:15.281][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2025-02-16 23:00:15.282][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:15.284][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:15.290][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:15.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:15.312][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.323][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.324][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.369][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.378][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.410][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.411][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.421][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:15.484][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-02-16 23:00:15.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:15.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:15.524][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-02-16 23:00:15.525][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:15.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-02-16 23:00:15.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:15.545][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2025-02-16 23:00:15.547][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:15.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:15.550][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:15.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:15.573][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.595][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.643][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.673][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:15.742][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-02-16 23:00:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:15.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:15.784][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-02-16 23:00:15.785][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:15.787][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-02-16 23:00:15.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:15.809][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2025-02-16 23:00:15.811][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:15.813][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:15.816][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:15.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:15.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:15.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:15.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:15.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:15.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:15.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:15.838][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.849][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.863][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:15.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:15.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.895][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:15.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:15.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.930][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:15.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:15.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:15.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:15.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.010][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-02-16 23:00:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:16.047][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-02-16 23:00:16.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:16.051][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-02-16 23:00:16.053][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:16.107][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-02-16 23:00:16.109][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:16.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:16.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:16.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:16.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.150][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:16.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:16.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:16.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:16.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.161][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:16.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:16.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:16.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:16.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:16.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:16.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:16.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:16.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:16.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.196][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:16.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:16.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.216][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:16.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:16.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.219][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.226][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:16.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:16.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:16.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:16.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:16.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.301][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-02-16 23:00:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:16.331][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-02-16 23:00:16.332][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:16.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-02-16 23:00:16.336][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:16.355][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-02-16 23:00:16.357][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:16.359][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:16.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:16.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:16.397][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.400][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.407][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:16.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:16.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:16.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.416][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:16.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:16.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:16.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:16.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:16.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:16.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:16.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:16.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:16.447][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:16.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.451][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:16.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:16.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.470][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.477][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:16.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:16.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:16.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.487][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:16.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:16.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:16.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:16.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:16.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:16.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:16.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.554][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-02-16 23:00:16.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:16.588][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-02-16 23:00:16.589][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:16.591][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-02-16 23:00:16.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:16.610][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-02-16 23:00:16.612][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:16.619][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:16.621][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:16.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:16.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.656][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:16.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:16.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:16.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:16.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:16.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:16.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:16.697][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:16.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.700][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:16.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:16.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.720][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:16.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:16.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:16.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:16.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.730][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:16.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:16.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:16.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:16.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:16.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.804][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-02-16 23:00:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:16.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:16.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:16.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:16.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:16.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:16.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:16.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:16.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:16.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:16.841][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-02-16 23:00:16.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:16.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-02-16 23:00:16.846][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:17.085][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-02-16 23:00:17.087][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:17.089][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:17.090][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:17.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:17.131][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.141][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.146][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.151][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:17.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:17.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:17.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:17.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:17.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:17.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.201][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:17.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.232][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:17.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:17.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:17.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:17.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.243][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:17.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:17.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:17.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:17.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:17.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:17.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:17.326][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-02-16 23:00:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:17.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:17.382][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-02-16 23:00:17.383][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:17.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-02-16 23:00:17.388][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:17.405][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-02-16 23:00:17.406][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:17.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:17.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:17.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:17.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.452][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:17.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:17.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:17.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.505][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:17.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.511][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.536][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:17.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:17.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.553][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:17.555][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:17.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:17.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:17.579][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:17.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:17.641][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-02-16 23:00:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:17.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:17.672][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-02-16 23:00:17.674][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:17.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-02-16 23:00:17.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:17.695][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-02-16 23:00:17.697][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:17.698][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:17.700][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:17.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:17.726][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:17.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:17.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:17.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:17.775][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:17.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.779][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:17.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.784][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:17.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.799][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:17.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:17.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.803][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.810][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:17.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:17.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:17.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:17.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:17.874][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-02-16 23:00:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:17.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:17.918][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-02-16 23:00:17.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:17.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-02-16 23:00:17.924][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:17.939][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-02-16 23:00:17.941][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:17.942][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:17.944][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:17.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:17.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:17.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:17.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:17.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:17.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:17.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:17.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:17.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:17.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.986][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:17.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:17.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:17.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:17.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.019][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.021][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.041][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.051][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.125][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-02-16 23:00:18.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:18.160][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-02-16 23:00:18.162][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:18.165][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-02-16 23:00:18.168][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:18.188][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-02-16 23:00:18.189][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:18.191][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:18.193][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:18.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:18.213][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:18.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:18.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:18.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:18.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:18.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:18.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.271][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.274][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.295][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.305][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.385][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-02-16 23:00:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:18.425][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-02-16 23:00:18.426][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:18.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-02-16 23:00:18.430][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:18.449][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-02-16 23:00:18.451][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:18.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:18.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:18.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:18.471][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.481][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:18.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:18.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:18.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:18.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.491][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:18.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:18.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.525][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.552][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.563][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.635][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-02-16 23:00:18.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:18.664][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-02-16 23:00:18.665][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:18.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-02-16 23:00:18.675][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:18.690][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-02-16 23:00:18.692][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:18.694][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:18.695][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:18.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:18.718][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.728][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:18.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:18.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:18.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:18.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:18.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:18.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:18.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:18.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:18.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:18.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:18.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.784][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.821][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.835][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:18.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.900][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-02-16 23:00:18.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:18.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:18.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:18.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:18.937][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-02-16 23:00:18.938][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:18.940][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-02-16 23:00:18.942][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:18.960][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-02-16 23:00:18.962][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:18.964][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:18.967][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:18.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:18.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:18.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:18.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:18.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:18.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:18.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:18.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:18.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:18.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.007][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:19.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:19.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:19.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:19.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.017][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:19.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:19.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:19.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:19.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:19.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:19.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:19.057][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:19.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.061][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:19.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.066][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:19.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:19.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:19.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:19.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:19.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:19.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:19.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.101][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:19.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:19.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.105][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.161][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-02-16 23:00:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:19.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:19.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:19.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:19.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:19.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:19.222][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-02-16 23:00:19.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:19.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-02-16 23:00:19.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:19.245][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-02-16 23:00:19.248][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:19.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:19.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:19.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:19.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:19.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:19.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:19.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:19.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:19.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.288][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:19.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:19.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:19.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.298][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:19.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:19.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:19.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:19.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:19.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:19.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:19.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:19.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:19.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.334][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:19.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:19.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:19.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:19.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:19.390][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:19.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.399][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:19.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:19.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.458][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-02-16 23:00:19.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:19.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:19.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:19.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:19.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:19.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:19.496][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-02-16 23:00:19.498][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:19.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-02-16 23:00:19.502][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:19.525][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-02-16 23:00:19.527][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:19.529][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:19.530][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:19.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:19.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:19.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:19.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:19.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:19.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:19.554][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.571][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:19.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:19.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:19.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.581][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:19.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:19.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:19.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:19.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:19.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:19.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:19.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.601][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:19.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:19.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.616][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:19.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.621][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:19.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.636][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:19.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:19.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:19.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.646][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:19.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:19.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:19.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:19.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:19.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:19.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:19.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:19.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.721][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-02-16 23:00:19.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.809][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:19.813][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:19.815][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 23:00:19.817][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:19.819][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-02-16 23:00:19.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:19.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:19.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:19.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:19.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:19.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:19.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:19.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:19.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:19.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:19.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:19.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:19.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:19.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:19.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:19.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:20.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:20.793][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:20.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-02-16 23:00:20.796][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:20.809][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-02-16 23:00:20.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:20.817][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:20.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-02-16 23:00:20.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:20.836][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-02-16 23:00:20.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:20.853][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-02-16 23:00:20.854][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:20.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-02-16 23:00:20.858][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:20.874][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-02-16 23:00:20.876][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:20.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:20.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:20.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:20.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:20.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:20.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:20.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:20.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:20.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:20.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:20.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:20.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:20.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:20.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.913][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:20.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.923][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:20.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:20.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:20.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:20.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:20.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:20.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:20.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:20.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:20.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:20.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:20.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:20.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:20.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.957][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:20.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.963][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:20.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:20.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.977][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:20.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:20.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:20.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:20.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:20.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:20.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:20.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:21.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:21.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:21.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:21.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:21.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.101][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-02-16 23:00:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:21.196][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-02-16 23:00:21.198][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:21.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-02-16 23:00:21.204][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:21.239][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-02-16 23:00:21.241][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:21.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:21.244][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:21.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.285][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:21.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:21.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:21.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:21.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:21.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:21.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:21.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:21.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:21.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:21.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.328][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:21.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:21.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.340][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:21.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:21.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:21.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:21.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:21.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.370][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:21.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:21.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:21.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:21.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:21.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:21.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.447][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-02-16 23:00:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:21.505][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:21.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 23:00:21.508][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:21.511][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-02-16 23:00:21.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:21.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:21.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:21.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:21.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:21.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:21.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:21.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:22.390][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:22.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-02-16 23:00:22.394][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:22.396][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-02-16 23:00:22.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:22.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:22.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:22.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:22.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:22.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:22.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:22.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:23.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:23.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:23.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-16 23:00:23.536][biodb::testThat]
biodb.INFO [2025-02-16 23:00:23.538][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-02-16 23:00:23.539][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:23.540][biodb::testThat]
biodb.TRACE[2025-02-16 23:00:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-16 23:00:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-16 23:00:23.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:23.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:23.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:23.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:23.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:23.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:23.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:23.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:23.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:23.600][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.INFO [2025-02-16 23:00:23.609][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.DEBUG[2025-02-16 23:00:23.612][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:23.613][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:23.615][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:23.923][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:24.243][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:24.246][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2025-02-16 23:00:24.260][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2025-02-16 23:00:24.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:24.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:24.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:24.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:24.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:24.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:24.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:24.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:24.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:24.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:24.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:24.322][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:24.324][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:24.337][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:24.641][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:24.942][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:24.945][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2025-02-16 23:00:24.950][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2025-02-16 23:00:24.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:24.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:24.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:24.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:24.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:24.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:24.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:24.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:24.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:25.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:25.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:25.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:25.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:25.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:25.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:25.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:25.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:25.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:25.043][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-16 23:00:25.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:25.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:25.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:25.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:25.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:25.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:25.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:25.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.077][private$selectFields]
biodb.TRACE[2025-02-16 23:00:25.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:25.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:25.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.087][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:25.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-02-16 23:00:25.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:25.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:25.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:25.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:25.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:25.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:25.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.167][private$selectFields]
biodb.TRACE[2025-02-16 23:00:25.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:25.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:25.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.192][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.202][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-02-16 23:00:25.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:25.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:25.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:25.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:25.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:25.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:25.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:25.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.265][private$selectFields]
biodb.TRACE[2025-02-16 23:00:25.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:25.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:25.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.281][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:25.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.287][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-02-16 23:00:25.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-16 23:00:25.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-16 23:00:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:25.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:25.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:25.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:25.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:25.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:25.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:25.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:25.547][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:25.551][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:25.552][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:25.554][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:26.889][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:27.191][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:27.196][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2025-02-16 23:00:27.203][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2025-02-16 23:00:27.210][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:27.216][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:27.217][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:27.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:27.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:27.824][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:27.827][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2025-02-16 23:00:27.832][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2025-02-16 23:00:27.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:27.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:27.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:27.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:27.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:27.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:27.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:27.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:27.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:27.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:27.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:27.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:27.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:27.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:27.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:27.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:27.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:27.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:27.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:27.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:27.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:27.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:27.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:27.994][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-16 23:00:28.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.047][private$selectFields]
biodb.TRACE[2025-02-16 23:00:28.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:28.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:28.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.063][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.069][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-02-16 23:00:28.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.154][private$selectFields]
biodb.TRACE[2025-02-16 23:00:28.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:28.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:28.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.183][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.192][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-02-16 23:00:28.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.265][private$selectFields]
biodb.TRACE[2025-02-16 23:00:28.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:28.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:28.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.281][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.287][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-02-16 23:00:28.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-16 23:00:28.305][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-16 23:00:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-16 23:00:28.348][biodb::testThat]
biodb.INFO [2025-02-16 23:00:28.349][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-02-16 23:00:28.351][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:28.352][biodb::testThat]
biodb.TRACE[2025-02-16 23:00:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-16 23:00:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-16 23:00:28.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:28.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:28.420][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:28.423][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:28.425][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-02-16 23:00:28.427][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:28.429][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-02-16 23:00:28.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:28.491][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:28.496][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:28.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-02-16 23:00:28.501][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:28.505][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-02-16 23:00:28.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:28.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:28.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:28.586][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-16 23:00:28.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.623][private$selectFields]
biodb.TRACE[2025-02-16 23:00:28.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:28.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:28.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.639][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.645][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-02-16 23:00:28.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.697][private$selectFields]
biodb.TRACE[2025-02-16 23:00:28.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:28.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:28.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.718][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.726][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:28.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.744][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-02-16 23:00:28.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.770][private$selectFields]
biodb.TRACE[2025-02-16 23:00:28.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:28.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:28.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.785][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:28.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-02-16 23:00:28.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-16 23:00:28.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-16 23:00:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:28.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:28.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:28.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:28.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-02-16 23:00:28.879][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:28.881][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-02-16 23:00:28.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:28.889][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:28.890][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-02-16 23:00:28.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:28.895][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-02-16 23:00:28.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:28.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:28.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:28.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:28.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:28.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:28.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:28.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.051][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-16 23:00:29.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.079][private$selectFields]
biodb.TRACE[2025-02-16 23:00:29.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:29.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:29.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.095][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-02-16 23:00:29.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.155][private$selectFields]
biodb.TRACE[2025-02-16 23:00:29.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:29.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:29.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.170][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-02-16 23:00:29.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.232][private$selectFields]
biodb.TRACE[2025-02-16 23:00:29.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:29.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:29.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-02-16 23:00:29.276][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-16 23:00:29.277][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-16 23:00:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-16 23:00:29.310][biodb::testThat]
biodb.INFO [2025-02-16 23:00:29.312][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-02-16 23:00:29.314][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:29.316][biodb::testThat]
biodb.TRACE[2025-02-16 23:00:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-16 23:00:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-16 23:00:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:29.384][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:29.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:29.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-02-16 23:00:29.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:29.394][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-02-16 23:00:29.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.430][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:29.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:29.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-02-16 23:00:29.437][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:29.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-02-16 23:00:29.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.516][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-16 23:00:29.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.562][private$selectFields]
biodb.TRACE[2025-02-16 23:00:29.563][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:29.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:29.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.577][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-02-16 23:00:29.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.642][private$selectFields]
biodb.TRACE[2025-02-16 23:00:29.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:29.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:29.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-02-16 23:00:29.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.716][private$selectFields]
biodb.TRACE[2025-02-16 23:00:29.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:29.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:29.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:29.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.739][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-02-16 23:00:29.756][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-16 23:00:29.757][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-16 23:00:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:29.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:29.887][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:29.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-02-16 23:00:29.891][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:29.894][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-02-16 23:00:29.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:29.904][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:29.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-02-16 23:00:29.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:29.914][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-02-16 23:00:29.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:29.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:29.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:29.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:29.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:29.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:29.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:29.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:30.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:30.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:30.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:30.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:30.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:30.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:30.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:30.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:30.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:30.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:30.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:30.033][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-16 23:00:30.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:30.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:30.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:30.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:30.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:30.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:30.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.063][private$selectFields]
biodb.TRACE[2025-02-16 23:00:30.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:30.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:30.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-02-16 23:00:30.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:30.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:30.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:30.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:30.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:30.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:30.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:30.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.160][private$selectFields]
biodb.TRACE[2025-02-16 23:00:30.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:30.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:30.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.176][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.181][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.182][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.202][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-02-16 23:00:30.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:30.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:30.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:30.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:30.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:30.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:30.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.242][private$selectFields]
biodb.TRACE[2025-02-16 23:00:30.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-16 23:00:30.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-16 23:00:30.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.258][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-02-16 23:00:30.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.264][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-02-16 23:00:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:30.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-02-16 23:00:30.282][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-16 23:00:30.283][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-16 23:00:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-16 23:00:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-16 23:00:30.478][biodb::testThat]
biodb.INFO [2025-02-16 23:00:30.481][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-02-16 23:00:30.483][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:30.485][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:30.489][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-02-16 23:00:30.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:30.495][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-02-16 23:00:30.497][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-16 23:00:30.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-16 23:00:30.502][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:30.504][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 23:00:30.507][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-16 23:00:30.509][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-16 23:00:30.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:30.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:30.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:30.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:30.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:30.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:30.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:30.594][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2025-02-16 23:00:30.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:30.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:30.601][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2025-02-16 23:00:30.924][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2025-02-16 23:00:31.232][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:31.235][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2025-02-16 23:00:31.250][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2025-02-16 23:00:31.255][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2025-02-16 23:00:31.257][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-16 23:00:31.259][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:31.261][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:31.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:31.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:31.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:31.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:31.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:31.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:31.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:31.324][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:31.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:31.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.338][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:31.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:31.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:31.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:31.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:31.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.355][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:31.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:31.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.361][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:31.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:31.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:31.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:31.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:31.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:31.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.384][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:31.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:31.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:31.392][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:31.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:31.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:31.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:31.466][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-02-16 23:00:31.467][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-02-16 23:00:31.486][biodb::testThat]
biodb.INFO [2025-02-16 23:00:31.488][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-02-16 23:00:31.490][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:31.491][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:31.560][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-02-16 23:00:31.562][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-02-16 23:00:31.564][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-16 23:00:31.566][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2025-02-16 23:00:31.568][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-16 23:00:31.570][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-16 23:00:31.572][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:31.574][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 23:00:31.576][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-16 23:00:31.578][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-16 23:00:31.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:31.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:31.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:31.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:31.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:31.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:31.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:31.624][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2025-02-16 23:00:31.627][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:31.629][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:31.630][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2025-02-16 23:00:31.940][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2025-02-16 23:00:32.241][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:32.243][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2025-02-16 23:00:32.248][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.DEBUG[2025-02-16 23:00:32.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:32.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:32.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:32.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:32.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:32.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:32.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:32.280][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2025-02-16 23:00:32.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:32.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:32.286][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2025-02-16 23:00:32.671][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2025-02-16 23:00:32.978][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:32.982][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2025-02-16 23:00:32.987][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2025-02-16 23:00:32.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:32.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:32.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:32.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:33.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:33.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:33.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:33.004][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2025-02-16 23:00:33.008][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:33.010][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:33.012][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2025-02-16 23:00:33.333][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2025-02-16 23:00:33.646][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:33.649][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2025-02-16 23:00:33.654][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2025-02-16 23:00:33.658][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2025-02-16 23:00:33.700][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-16 23:00:33.702][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-02-16 23:00:33.704][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:33.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:33.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:33.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:33.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:33.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:33.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:33.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:33.779][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.790][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:33.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:33.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:33.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:33.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:33.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:33.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:33.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:33.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:33.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.826][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:33.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:33.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:33.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:33.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.841][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:33.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:33.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.849][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:33.850][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:33.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:33.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:33.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:33.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:33.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:33.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:33.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:33.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:33.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:33.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:33.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:33.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:33.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.981][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:33.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:33.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:33.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:33.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.010][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.020][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:34.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:34.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.040][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:34.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:34.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:34.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.050][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:34.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:34.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:34.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:34.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:34.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:34.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:34.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:34.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:34.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:34.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:34.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:34.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:34.172][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.182][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:34.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:34.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.186][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:34.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.192][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:34.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:34.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:34.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:34.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.216][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.233][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:34.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:34.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:34.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:34.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:34.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:34.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:34.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:34.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:34.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:34.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:34.370][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-02-16 23:00:34.372][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-02-16 23:00:34.373][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-02-16 23:00:34.397][biodb::testThat]
biodb.INFO [2025-02-16 23:00:34.399][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-02-16 23:00:34.400][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:34.401][biodb::testThat]
biodb.INFO [2025-02-16 23:00:34.471][biodb::testThat]
biodb.INFO [2025-02-16 23:00:34.473][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-02-16 23:00:34.474][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:34.481][biodb::testThat]
biodb.INFO [2025-02-16 23:00:34.549][biodb::testThat]
biodb.INFO [2025-02-16 23:00:34.551][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-02-16 23:00:34.552][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:34.554][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:34.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:34.566][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:34.568][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:34.572][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:34.978][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:35.397][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:35.402][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2025-02-16 23:00:35.414][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2025-02-16 23:00:35.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:35.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:35.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:35.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:35.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:35.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:35.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:35.623][ef$get] fields variable is a list.
biodb.INFO [2025-02-16 23:00:35.629][biodb::testThat]
biodb.INFO [2025-02-16 23:00:35.633][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2025-02-16 23:00:35.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:35.640][biodb::testThat]
biodb.ERROR[2025-02-16 23:00:35.669][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-02-16 23:00:35.698][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-02-16 23:00:35.726][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-16 23:00:35.728][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-02-16 23:00:35.732][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-02-16 23:00:35.734][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-16 23:00:35.736][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:35.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:35.741][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:35.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:35.745][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-16 23:00:35.766][biodb::testContext]
biodb.INFO [2025-02-16 23:00:35.768][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 23:00:35.771][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-02-16 23:00:35.841][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 23:00:35.844][biodb::testContext]
biodb.INFO [2025-02-16 23:00:35.848][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-16 23:00:35.852][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-16 23:00:35.862][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:35.865][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-16 23:00:35.867][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-16 23:00:35.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:35.877][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-16 23:00:35.880][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-16 23:00:35.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:35.890][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-16 23:00:35.892][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-16 23:00:35.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:35.955][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-16 23:00:35.958][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-16 23:00:35.960][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-16 23:00:35.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:35.968][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-16 23:00:35.970][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-16 23:00:35.973][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-16 23:00:35.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:35.980][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-16 23:00:35.982][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-16 23:00:35.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:35.990][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-16 23:00:35.992][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-16 23:00:35.994][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-16 23:00:35.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:35.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:35.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.001][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-16 23:00:36.003][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-16 23:00:36.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.011][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-16 23:00:36.013][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-16 23:00:36.015][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-16 23:00:36.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.022][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-16 23:00:36.024][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-16 23:00:36.031][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-16 23:00:36.036][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-16 23:00:36.038][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-16 23:00:36.040][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-16 23:00:36.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.048][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-16 23:00:36.050][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-16 23:00:36.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.058][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-16 23:00:36.060][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-16 23:00:36.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.067][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-16 23:00:36.069][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-16 23:00:36.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.076][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-16 23:00:36.078][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-16 23:00:36.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.085][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-16 23:00:36.087][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-16 23:00:36.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.094][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-16 23:00:36.096][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-16 23:00:36.102][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-16 23:00:36.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.111][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-16 23:00:36.114][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-16 23:00:36.116][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-16 23:00:36.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.168][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-16 23:00:36.172][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.177][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-16 23:00:36.180][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.184][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:36.199][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.201][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.204][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.206][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.208][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 23:00:36.210][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:36.213][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.215][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-16 23:00:36.217][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:36.219][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.221][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.223][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:36.223][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:36.223][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:36.223][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 23:00:36.223][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 23:00:36.225][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:36.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.232][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:36.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.235][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.239][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.241][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:36.243][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:36.245][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.247][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.249][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-16 23:00:36.252][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.255][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 23:00:36.257][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.259][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:36.261][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.263][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.265][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.267][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.269][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 23:00:36.271][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:36.273][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.275][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-16 23:00:36.277][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:36.279][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.281][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.283][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:36.283][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:36.283][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:36.283][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 23:00:36.283][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 23:00:36.285][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:36.287][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.288][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.290][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:36.292][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.293][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.297][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:36.301][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:36.303][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.304][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.307][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-16 23:00:36.310][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.312][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-16 23:00:36.314][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.316][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:36.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.320][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.322][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.326][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 23:00:36.328][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:36.331][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.332][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-16 23:00:36.334][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:36.336][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.338][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.340][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.342][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:36.344][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.348][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:36.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.352][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.354][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.356][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.359][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:36.360][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:36.362][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.364][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.366][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-16 23:00:36.370][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.372][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 23:00:36.374][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.376][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:36.378][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.380][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.383][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.384][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.387][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 23:00:36.389][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:36.391][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.393][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-16 23:00:36.395][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:36.398][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.400][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:36.402][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.403][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:36.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.407][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.409][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:36.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:36.413][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:36.415][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:36.417][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.419][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:36.421][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:36.423][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:36.437][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:36.441][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:36.443][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:36.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:36.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:36.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:36.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:36.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.008][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-16 23:00:37.011][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-16 23:00:37.014][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-16 23:00:37.016][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-16 23:00:37.019][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 23:00:37.022][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-16 23:00:37.024][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-16 23:00:37.027][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-16 23:00:37.030][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-16 23:00:37.032][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-16 23:00:37.035][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 23:00:37.038][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-16 23:00:37.040][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-16 23:00:37.043][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-16 23:00:37.046][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-16 23:00:37.048][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-16 23:00:37.051][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-16 23:00:37.054][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-16 23:00:37.056][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 23:00:37.059][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-16 23:00:37.062][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-16 23:00:37.064][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-16 23:00:37.067][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-16 23:00:37.070][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-16 23:00:37.073][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-16 23:00:37.077][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-16 23:00:37.081][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-16 23:00:37.086][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-16 23:00:37.093][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-16 23:00:37.096][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-16 23:00:37.098][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-16 23:00:37.101][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-16 23:00:37.104][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-16 23:00:37.108][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-16 23:00:37.111][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-16 23:00:37.113][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-16 23:00:37.117][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-16 23:00:37.120][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-16 23:00:37.122][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-16 23:00:37.125][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-16 23:00:37.129][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-16 23:00:37.133][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-16 23:00:37.138][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-16 23:00:37.145][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-16 23:00:37.148][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-16 23:00:37.151][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-16 23:00:37.153][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-16 23:00:37.156][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-16 23:00:37.158][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-16 23:00:37.161][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-16 23:00:37.164][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-16 23:00:37.166][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-16 23:00:37.169][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-16 23:00:37.171][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-16 23:00:37.174][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-16 23:00:37.176][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-16 23:00:37.179][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-16 23:00:37.181][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-16 23:00:37.184][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-16 23:00:37.187][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-16 23:00:37.190][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-16 23:00:37.193][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-16 23:00:37.195][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-16 23:00:37.198][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-16 23:00:37.201][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-16 23:00:37.203][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-16 23:00:37.206][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 23:00:37.209][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 23:00:37.211][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-16 23:00:37.214][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-16 23:00:37.217][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-16 23:00:37.219][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-16 23:00:37.222][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-16 23:00:37.224][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-16 23:00:37.227][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-16 23:00:37.230][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-16 23:00:37.232][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-16 23:00:37.236][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-16 23:00:37.239][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-16 23:00:37.242][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-16 23:00:37.244][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-16 23:00:37.247][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-16 23:00:37.250][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-16 23:00:37.253][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-16 23:00:37.257][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-16 23:00:37.259][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:37.261][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.265][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:37.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:37.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:37.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:37.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:37.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:37.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:37.486][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-02-16 23:00:37.490][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-02-16 23:00:37.500][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:37.503][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-16 23:00:37.505][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:37.507][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:37.509][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:37.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:37.514][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:37.517][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-02-16 23:00:37.529][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-16 23:00:37.531][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:37.533][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:37.535][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-02-16 23:00:37.537][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-02-16 23:00:37.539][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-02-16 23:00:37.541][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:37.543][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:37.543][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:37.543][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:37.545][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-16 23:00:37.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:37.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:37.550][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:37.552][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:37.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:37.556][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:37.558][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 23:00:37.558][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-02-16 23:00:37.560][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:37.561][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:37.563][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:37.565][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-02-16 23:00:37.565][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-02-16 23:00:37.568][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 23:00:37.571][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 23:00:37.574][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-02-16 23:00:37.577][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 23:00:37.580][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 23:00:37.583][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 23:00:37.588][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-02-16 23:00:37.590][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-02-16 23:00:37.593][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-02-16 23:00:37.596][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-02-16 23:00:37.598][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 23:00:37.600][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 23:00:37.603][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-02-16 23:00:37.605][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-02-16 23:00:37.610][biodb::testThat]
biodb.INFO [2025-02-16 23:00:37.612][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2025-02-16 23:00:37.614][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:37.616][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:37.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-02-16 23:00:37.914][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:37.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:38.105][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-02-16 23:00:43.308][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl does not exist.
biodb.TRACE[2025-02-16 23:00:43.310][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-16 23:00:43.313][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-16 23:00:43.315][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.INFO [2025-02-16 23:00:43.817][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl". Retrying connection to server...
biodb.DEBUG[2025-02-16 23:00:43.819][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:43.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:43.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-02-16 23:00:44.177][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl does not exist.
biodb.TRACE[2025-02-16 23:00:44.179][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-16 23:00:44.610][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-16 23:00:44.613][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.INFO [2025-02-16 23:00:44.906][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl". Retrying connection to server...
biodb.DEBUG[2025-02-16 23:00:44.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:44.910][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:44.912][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-02-16 23:00:45.232][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl does not exist.
biodb.TRACE[2025-02-16 23:00:45.234][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-16 23:00:45.237][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-16 23:00:45.239][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.INFO [2025-02-16 23:00:45.897][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl". Retrying connection to server...
biodb.DEBUG[2025-02-16 23:00:45.900][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:45.902][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:45.905][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2025-02-16 23:00:46.316][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2025-02-16 23:00:46.845][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:46.849][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2025-02-16 23:00:46.857][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2025-02-16 23:00:46.865][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:46.872][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:46.877][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:46.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:47.517][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:47.853][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:47.858][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content"
biodb.TRACE[2025-02-16 23:00:47.866][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.request"
biodb.DEBUG[2025-02-16 23:00:47.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:47.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:47.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:48.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:48.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:48.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:48.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:48.111][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:48.248][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:48.265][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:48.269][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:48.901][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:49.256][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:49.261][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content"
biodb.TRACE[2025-02-16 23:00:49.269][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.request"
biodb.DEBUG[2025-02-16 23:00:49.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:49.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:49.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:49.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:49.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:49.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:49.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:49.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:49.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:49.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:49.491][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:49.497][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:49.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-02-16 23:00:49.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:49.508][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-02-16 23:00:49.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:49.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:49.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:49.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:49.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:49.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:49.618][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:49.621][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-02-16 23:00:49.624][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:49.628][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-02-16 23:00:49.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:49.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:49.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:49.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:49.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:49.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:49.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:49.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:49.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:49.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:49.766][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:49.772][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:49.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2025-02-16 23:00:49.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:49.782][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2025-02-16 23:00:49.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:49.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:49.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:49.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:49.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:49.945][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:49.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:49.956][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2025-02-16 23:00:49.959][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:49.963][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2025-02-16 23:00:49.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:49.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:49.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:50.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:50.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:50.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:50.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:50.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:50.086][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:50.088][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:50.092][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:50.795][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:51.161][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:51.165][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content"
biodb.TRACE[2025-02-16 23:00:51.173][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.request"
biodb.DEBUG[2025-02-16 23:00:51.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:51.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:51.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:51.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:51.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:51.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:51.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-16 23:00:51.245][biodb::testThat]
biodb.INFO [2025-02-16 23:00:51.247][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2025-02-16 23:00:51.249][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:51.251][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:51.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:51.314][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:51.318][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:51.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:51.693][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:52.107][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:52.111][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2025-02-16 23:00:52.121][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2025-02-16 23:00:52.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:52.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:52.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:52.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:52.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:52.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:52.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:52.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:52.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:52.193][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:52.197][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:52.559][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:52.909][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:52.913][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2025-02-16 23:00:52.921][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2025-02-16 23:00:52.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:52.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:52.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:52.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:52.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:52.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:52.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-16 23:00:52.961][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-16 23:00:52.964][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-02-16 23:00:52.966][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-02-16 23:00:52.968][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-16 23:00:52.970][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:52.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:52.974][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:52.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:52.977][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:52.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-16 23:00:52.986][biodb::testContext]
biodb.INFO [2025-02-16 23:00:52.988][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 23:00:52.990][biodb::testContext] Test context - Test web services
biodb.INFO [2025-02-16 23:00:52.992][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 23:00:52.994][biodb::testContext]
biodb.INFO [2025-02-16 23:00:52.998][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-16 23:00:53.002][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-16 23:00:53.011][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:53.013][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-16 23:00:53.015][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-16 23:00:53.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.023][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-16 23:00:53.025][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-16 23:00:53.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.032][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-16 23:00:53.034][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-16 23:00:53.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.041][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-16 23:00:53.043][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-16 23:00:53.045][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-16 23:00:53.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.051][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-16 23:00:53.053][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-16 23:00:53.055][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-16 23:00:53.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.063][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-16 23:00:53.065][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-16 23:00:53.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.072][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-16 23:00:53.073][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-16 23:00:53.075][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-16 23:00:53.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.082][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-16 23:00:53.084][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-16 23:00:53.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.091][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-16 23:00:53.093][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-16 23:00:53.095][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-16 23:00:53.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.103][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-16 23:00:53.106][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-16 23:00:53.108][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-16 23:00:53.110][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-16 23:00:53.112][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-16 23:00:53.114][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-16 23:00:53.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.122][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-16 23:00:53.124][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-16 23:00:53.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.131][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-16 23:00:53.133][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-16 23:00:53.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.141][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-16 23:00:53.143][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-16 23:00:53.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.151][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-16 23:00:53.153][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-16 23:00:53.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.160][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-16 23:00:53.163][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-16 23:00:53.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.171][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-16 23:00:53.173][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-16 23:00:53.179][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-16 23:00:53.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.186][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-16 23:00:53.189][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-16 23:00:53.191][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-16 23:00:53.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.199][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-16 23:00:53.202][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.204][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-16 23:00:53.206][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.208][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:53.210][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.212][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.214][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.216][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.218][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 23:00:53.220][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:53.222][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.224][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-16 23:00:53.225][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:53.227][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.229][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.231][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:53.231][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:53.231][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:53.231][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 23:00:53.231][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 23:00:53.233][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:53.235][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.237][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.239][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:53.241][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.243][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.245][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.247][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.249][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:53.250][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:53.252][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.254][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.257][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-16 23:00:53.260][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.262][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 23:00:53.264][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.266][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:53.268][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.270][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.272][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.274][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.276][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 23:00:53.278][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:53.280][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.282][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-16 23:00:53.284][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:53.286][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.288][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.290][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:53.290][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:53.290][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:53.290][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 23:00:53.290][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 23:00:53.292][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:53.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.296][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.298][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:53.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.303][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.305][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.307][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:53.309][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:53.311][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.313][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.315][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-16 23:00:53.318][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.320][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-16 23:00:53.322][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.324][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:53.326][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.328][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.330][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.334][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 23:00:53.336][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:53.338][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.340][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-16 23:00:53.342][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:53.344][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.347][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.349][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:53.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.355][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:53.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.358][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.360][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.362][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.364][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:53.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:53.368][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.370][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.372][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-16 23:00:53.376][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.378][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 23:00:53.380][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.382][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:53.384][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.386][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.388][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.390][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.393][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 23:00:53.395][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:53.397][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.400][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-16 23:00:53.402][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:53.404][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.406][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.408][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.410][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:53.413][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.417][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:53.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:53.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:53.423][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.425][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.428][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:53.430][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:53.432][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.434][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:53.437][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:53.439][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.605][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-16 23:00:53.607][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-16 23:00:53.610][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-16 23:00:53.612][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-16 23:00:53.615][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 23:00:53.617][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-16 23:00:53.618][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-16 23:00:53.620][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-16 23:00:53.621][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-16 23:00:53.623][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-16 23:00:53.624][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 23:00:53.626][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-16 23:00:53.627][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-16 23:00:53.629][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-16 23:00:53.631][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-16 23:00:53.632][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-16 23:00:53.634][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-16 23:00:53.635][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-16 23:00:53.637][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 23:00:53.638][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-16 23:00:53.640][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-16 23:00:53.641][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-16 23:00:53.643][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-16 23:00:53.645][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-16 23:00:53.646][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-16 23:00:53.648][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-16 23:00:53.649][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-16 23:00:53.651][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-16 23:00:53.653][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-16 23:00:53.655][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-16 23:00:53.657][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-16 23:00:53.659][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-16 23:00:53.661][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-16 23:00:53.664][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-16 23:00:53.666][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-16 23:00:53.669][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-16 23:00:53.671][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-16 23:00:53.674][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-16 23:00:53.675][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-16 23:00:53.677][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-16 23:00:53.679][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-16 23:00:53.680][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-16 23:00:53.682][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-16 23:00:53.685][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-16 23:00:53.687][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-16 23:00:53.690][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-16 23:00:53.692][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-16 23:00:53.695][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-16 23:00:53.697][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-16 23:00:53.699][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-16 23:00:53.700][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-16 23:00:53.702][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-16 23:00:53.704][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-16 23:00:53.705][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-16 23:00:53.707][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-16 23:00:53.709][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-16 23:00:53.711][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-16 23:00:53.713][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-16 23:00:53.715][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-16 23:00:53.716][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-16 23:00:53.718][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-16 23:00:53.719][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-16 23:00:53.722][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-16 23:00:53.724][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-16 23:00:53.726][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-16 23:00:53.727][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-16 23:00:53.729][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 23:00:53.732][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 23:00:53.733][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-16 23:00:53.735][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-16 23:00:53.737][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-16 23:00:53.739][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-16 23:00:53.742][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-16 23:00:53.744][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-16 23:00:53.746][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-16 23:00:53.749][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-16 23:00:53.751][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-16 23:00:53.753][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-16 23:00:53.756][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-16 23:00:53.758][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-16 23:00:53.760][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-16 23:00:53.763][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-16 23:00:53.765][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-16 23:00:53.767][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-16 23:00:53.771][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-16 23:00:53.773][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:53.774][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.778][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:53.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:53.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:53.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:53.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:53.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:53.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:53.970][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-02-16 23:00:53.973][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-02-16 23:00:53.976][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:53.978][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.980][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:53.984][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.986][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:53.988][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.989][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-02-16 23:00:53.991][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-16 23:00:53.992][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:53.994][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:53.996][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-02-16 23:00:53.998][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-02-16 23:00:54.000][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-02-16 23:00:54.003][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:54.005][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:54.005][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:54.005][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:54.006][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-16 23:00:54.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:54.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:54.012][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:54.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:54.015][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:54.017][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:54.019][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 23:00:54.019][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-02-16 23:00:54.020][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:54.022][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:54.024][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:54.026][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-02-16 23:00:54.026][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-02-16 23:00:54.028][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 23:00:54.031][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 23:00:54.033][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-02-16 23:00:54.036][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 23:00:54.038][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 23:00:54.041][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 23:00:54.046][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-02-16 23:00:54.048][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-02-16 23:00:54.050][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-02-16 23:00:54.053][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-02-16 23:00:54.055][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 23:00:54.057][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 23:00:54.060][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-02-16 23:00:54.061][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-02-16 23:00:54.064][biodb::testThat]
biodb.INFO [2025-02-16 23:00:54.066][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-02-16 23:00:54.068][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:54.070][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:54.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-02-16 23:00:54.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:54.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-02-16 23:00:54.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:54.089][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-02-16 23:00:54.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:54.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:54.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:54.108][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2025-02-16 23:00:54.434][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2025-02-16 23:00:54.762][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:54.766][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2025-02-16 23:00:54.773][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2025-02-16 23:00:54.793][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-16 23:00:54.795][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-02-16 23:00:54.797][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-02-16 23:00:54.798][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-16 23:00:54.799][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:54.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:54.801][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:54.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:54.804][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-16 23:00:54.811][biodb::testContext]
biodb.INFO [2025-02-16 23:00:54.812][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 23:00:54.813][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-02-16 23:00:54.815][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-16 23:00:54.816][biodb::testContext]
biodb.INFO [2025-02-16 23:00:54.819][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-16 23:00:54.821][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-16 23:00:54.827][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:54.828][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-16 23:00:54.830][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-16 23:00:54.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.834][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-16 23:00:54.836][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-16 23:00:54.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.842][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-16 23:00:54.844][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-16 23:00:54.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.851][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-16 23:00:54.853][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-16 23:00:54.854][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-16 23:00:54.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.859][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-16 23:00:54.860][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-16 23:00:54.861][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-16 23:00:54.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.866][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-16 23:00:54.867][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-16 23:00:54.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.873][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-16 23:00:54.874][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-16 23:00:54.875][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-16 23:00:54.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.880][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-16 23:00:54.881][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-16 23:00:54.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.888][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-16 23:00:54.890][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-16 23:00:54.891][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-16 23:00:54.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.896][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-16 23:00:54.897][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-16 23:00:54.899][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-16 23:00:54.900][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-16 23:00:54.901][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-16 23:00:54.902][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-16 23:00:54.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.907][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-16 23:00:54.908][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-16 23:00:54.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.913][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-16 23:00:54.914][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-16 23:00:54.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.920][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-16 23:00:54.921][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-16 23:00:54.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.927][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-16 23:00:54.928][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-16 23:00:54.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.933][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-16 23:00:54.934][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-16 23:00:54.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.940][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-16 23:00:54.942][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-16 23:00:54.947][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-16 23:00:54.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.953][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-16 23:00:54.954][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-16 23:00:54.956][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-16 23:00:54.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:54.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:54.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:54.961][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-16 23:00:54.964][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:54.966][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-16 23:00:54.968][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:54.969][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:54.971][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:54.973][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:54.975][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:54.977][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:54.978][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 23:00:54.980][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:54.981][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:54.982][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-16 23:00:54.984][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:54.986][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:54.988][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:54.990][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:54.990][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:54.990][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:54.990][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 23:00:54.990][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 23:00:54.992][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:54.993][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:54.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:54.996][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:54.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:54.999][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.001][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.003][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.004][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:55.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:55.007][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.009][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.011][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-16 23:00:55.015][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.016][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 23:00:55.018][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.019][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:55.020][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.024][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.026][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.028][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 23:00:55.030][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:55.032][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.034][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-16 23:00:55.036][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:55.038][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.040][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.042][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:55.042][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:55.042][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:55.042][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-16 23:00:55.042][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-16 23:00:55.044][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:55.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.050][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:55.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.053][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.055][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.057][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.059][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:55.061][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:55.063][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.064][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.067][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-16 23:00:55.070][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.072][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-16 23:00:55.074][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.076][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:55.078][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.080][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.082][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.084][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.086][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-16 23:00:55.088][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:55.090][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.091][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-16 23:00:55.093][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:55.094][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.095][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.096][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.098][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:55.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:55.102][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.106][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:55.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:55.110][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.111][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.112][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-16 23:00:55.114][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.116][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-16 23:00:55.117][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:55.120][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.121][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.122][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.124][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.126][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-16 23:00:55.127][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:55.128][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.130][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-16 23:00:55.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:55.132][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.134][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.135][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.137][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-16 23:00:55.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.140][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:55.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.144][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.146][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.147][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:55.148][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:55.149][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.151][self$setPropertyValue]
biodb.DEBUG[2025-02-16 23:00:55.152][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:55.153][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.261][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-16 23:00:55.262][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-16 23:00:55.264][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-16 23:00:55.266][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-16 23:00:55.267][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 23:00:55.269][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-16 23:00:55.271][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-16 23:00:55.272][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-16 23:00:55.274][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-16 23:00:55.277][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-16 23:00:55.279][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 23:00:55.282][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-16 23:00:55.284][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-16 23:00:55.287][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-16 23:00:55.289][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-16 23:00:55.292][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-16 23:00:55.294][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-16 23:00:55.297][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-16 23:00:55.300][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 23:00:55.302][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-16 23:00:55.305][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-16 23:00:55.307][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-16 23:00:55.310][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-16 23:00:55.312][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-16 23:00:55.315][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-16 23:00:55.317][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-16 23:00:55.320][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-16 23:00:55.323][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-16 23:00:55.325][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-16 23:00:55.328][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-16 23:00:55.330][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-16 23:00:55.333][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-16 23:00:55.335][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-16 23:00:55.338][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-16 23:00:55.340][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-16 23:00:55.343][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-16 23:00:55.345][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-16 23:00:55.348][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-16 23:00:55.351][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-16 23:00:55.353][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-16 23:00:55.356][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-16 23:00:55.358][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-16 23:00:55.361][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-16 23:00:55.362][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-16 23:00:55.364][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-16 23:00:55.366][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-16 23:00:55.368][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-16 23:00:55.370][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-16 23:00:55.372][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-16 23:00:55.374][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-16 23:00:55.376][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-16 23:00:55.378][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-16 23:00:55.379][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-16 23:00:55.381][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-16 23:00:55.383][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-16 23:00:55.385][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-16 23:00:55.386][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-16 23:00:55.388][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-16 23:00:55.390][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-16 23:00:55.391][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-16 23:00:55.393][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-16 23:00:55.395][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-16 23:00:55.396][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-16 23:00:55.398][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-16 23:00:55.400][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-16 23:00:55.401][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-16 23:00:55.403][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 23:00:55.405][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 23:00:55.407][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-16 23:00:55.409][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-16 23:00:55.411][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-16 23:00:55.412][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-16 23:00:55.414][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-16 23:00:55.416][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-16 23:00:55.418][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-16 23:00:55.420][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-16 23:00:55.421][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-16 23:00:55.423][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-16 23:00:55.425][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-16 23:00:55.426][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-16 23:00:55.428][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-16 23:00:55.430][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-16 23:00:55.432][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-16 23:00:55.433][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-16 23:00:55.436][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-16 23:00:55.437][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-16 23:00:55.439][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.441][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-16 23:00:55.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.612][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-02-16 23:00:55.614][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-02-16 23:00:55.616][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.618][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.619][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.621][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-16 23:00:55.623][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.625][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.627][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.629][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-02-16 23:00:55.631][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-16 23:00:55.633][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-16 23:00:55.635][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.637][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-02-16 23:00:55.639][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-02-16 23:00:55.641][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-02-16 23:00:55.643][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-16 23:00:55.645][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-16 23:00:55.645][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-16 23:00:55.645][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-16 23:00:55.647][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-16 23:00:55.649][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.651][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-16 23:00:55.655][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-16 23:00:55.656][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-16 23:00:55.658][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-16 23:00:55.660][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 23:00:55.660][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-02-16 23:00:55.662][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-16 23:00:55.664][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-16 23:00:55.666][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-16 23:00:55.668][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-02-16 23:00:55.668][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-02-16 23:00:55.670][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-16 23:00:55.673][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-16 23:00:55.676][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-02-16 23:00:55.678][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-16 23:00:55.681][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-16 23:00:55.683][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-16 23:00:55.687][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-02-16 23:00:55.688][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-02-16 23:00:55.689][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-02-16 23:00:55.691][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-02-16 23:00:55.693][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 23:00:55.694][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-16 23:00:55.695][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-02-16 23:00:55.697][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-02-16 23:00:55.699][biodb::testThat]
biodb.INFO [2025-02-16 23:00:55.700][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-02-16 23:00:55.701][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-16 23:00:55.702][biodb::testThat]
biodb.DEBUG[2025-02-16 23:00:55.706][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-02-16 23:00:55.711][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:55.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-02-16 23:00:55.714][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:55.717][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-02-16 23:00:55.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2025-02-16 23:00:55.724][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-16 23:00:55.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2025-02-16 23:00:55.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-16 23:00:55.732][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2025-02-16 23:00:55.739][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-02-16 23:00:55.741][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-16 23:00:55.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2025-02-16 23:00:55.753][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-16 23:00:55.755][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-16 23:00:55.756][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-02-16 23:00:55.758][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-02-16 23:00:55.759][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-16 23:00:55.761][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-16 23:00:55.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:55.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:55.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:55.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:55.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:55.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:55.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-16 23:00:55.787][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2025-02-16 23:00:55.791][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-16 23:00:55.793][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-16 23:00:55.795][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2025-02-16 23:00:57.543][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2025-02-16 23:00:58.207][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-16 23:00:58.210][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2025-02-16 23:00:58.215][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2025-02-16 23:00:58.220][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2025-02-16 23:00:58.225][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-16 23:00:58.228][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-02-16 23:00:58.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-02-16 23:00:58.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-16 23:00:58.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:58.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:58.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:58.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:58.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:58.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-16 23:00:58.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:58.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:58.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-02-16 23:00:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-02-16 23:00:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:58.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:58.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-16 23:00:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-16 23:00:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-16 23:00:58.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-16 23:00:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-16 23:00:58.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-16 23:00:58.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.309][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:58.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:58.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-16 23:00:58.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.328][ef$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:58.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:58.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-02-16 23:00:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-16 23:00:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:58.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:58.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-16 23:00:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:58.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:58.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-16 23:00:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-16 23:00:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:58.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:58.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-02-16 23:00:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-02-16 23:00:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:58.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:58.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-16 23:00:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-16 23:00:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-16 23:00:58.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-16 23:00:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-16 23:00:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-16 23:00:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-16 23:00:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-16 23:00:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-16 23:00:58.438][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-02-16 23:00:58.451][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-16 23:00:58.453][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-02-16 23:00:58.454][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-02-16 23:00:58.456][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-16 23:00:58.458][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-16 23:00:58.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-16 23:00:58.462][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-16 23:00:58.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-16 23:00:58.466][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-16 23:00:58.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 363 ]
>
> proc.time()
user system elapsed
22.51 1.68 65.50
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 3.23 | 1.80 | 86.47 | |
| ChebiEntry | 0.58 | 0.01 | 0.59 | |