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This page was generated on 2024-11-25 11:39 -0500 (Mon, 25 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4459
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4349
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 157/2272HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
benchdamic 1.13.1  (landing page)
Matteo Calgaro
Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024)
git_url: https://git.bioconductor.org/packages/benchdamic
git_branch: devel
git_last_commit: 9c76ff0
git_last_commit_date: 2024-11-20 05:26:02 -0500 (Wed, 20 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation


BUILD BIN results for benchdamic on lconway

To the developers/maintainers of the benchdamic package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/benchdamic.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: benchdamic
Version: 1.13.1
Command: rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh benchdamic_1.13.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R benchdamic.buildbin-libdir
StartedAt: 2024-11-25 03:48:48 -0500 (Mon, 25 Nov 2024)
EndedAt: 2024-11-25 03:50:35 -0500 (Mon, 25 Nov 2024)
EllapsedTime: 107.0 seconds
RetCode: 0
Status:   OK  
PackageFile: benchdamic_1.13.1.tgz
PackageFileSize: 5.798 MiB

Command output

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### Running command:
###
###   rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh benchdamic_1.13.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R benchdamic.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=benchdamic.buildbin-libdir benchdamic_1.13.1.tar.gz'
>>>>>>> 

* installing *source* package ‘benchdamic’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Found more than one class "dist" in cache; using the first, from namespace 'BiocGenerics'
Also defined by ‘spam’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Found more than one class "dist" in cache; using the first, from namespace 'BiocGenerics'
Also defined by ‘spam’
** testing if installed package can be loaded from final location
Found more than one class "dist" in cache; using the first, from namespace 'BiocGenerics'
Also defined by ‘spam’
** testing if installed package keeps a record of temporary installation path
* DONE (benchdamic)