Multiple platform build/check report for BioC 3.21 - BUILD results for bcSeq on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4748
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4459
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4398
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for bcSeq on palomino7

To the developers/maintainers of the bcSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bcSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: bcSeq

Version: 1.29.0

Command: chmod a+r bcSeq -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bcSeq

StartedAt: 2024-11-27 17:09:57 -0500 (Wed, 27 Nov 2024)

EndedAt: 2024-11-27 17:11:07 -0500 (Wed, 27 Nov 2024)

EllapsedTime: 69.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r bcSeq -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bcSeq
###
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* checking for file 'bcSeq/DESCRIPTION' ... OK
* preparing 'bcSeq':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'bcSeq.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "bcSeq.tex" --max-iterations=20 -I "E:/biocbuild/bbs-3.21-bioc/R/share/texmf/tex/latex" -I "E:/biocbuild/bbs-3.21-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'bcSeq.Rnw' failed with diagnostics:
running 'texi2dvi' on 'bcSeq.tex' failed

LaTeX errors:
bcSeq.vrb:18: LaTeX Error: Command \textquotedbl unavailable in encoding OT1.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
bcSeq.vrb:18: LaTeX Error: Command \textquotedbl unavailable in encoding OT1.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              

--- failed re-building 'bcSeq.Rnw'

SUMMARY: processing the following file failed:
  'bcSeq.Rnw'

Error: Vignette re-building failed.
Execution halted