Jiaxing Lin
| Snapshot Date: 2025-08-06 14:04 -0400 (Wed, 06 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/bcSeq |
| git_branch: devel |
| git_last_commit: 2ece820 |
| git_last_commit_date: 2025-04-15 11:16:21 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-07 12:07 -0400 (Thu, 07 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4815 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4550 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4592 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4534 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 151/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bcSeq 1.31.0 (landing page) Jiaxing Lin
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the bcSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bcSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bcSeq |
| Version: 1.31.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bcSeq |
| StartedAt: 2025-08-06 16:13:31 -0400 (Wed, 06 Aug 2025) |
| EndedAt: 2025-08-06 16:14:32 -0400 (Wed, 06 Aug 2025) |
| EllapsedTime: 61.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bcSeq
###
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* checking for file ‘bcSeq/DESCRIPTION’ ... OK
* preparing ‘bcSeq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bcSeq.Rnw’ using knitr
Error: processing vignette 'bcSeq.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'bcSeq.tex' failed.
LaTeX errors:
! LaTeX Error: Command \textquotedbl unavailable in encoding OT1.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Emergency stop.
...
l.18 outfile << "
>fake ID "<<x<< endl<<x<<endl;
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘bcSeq.Rnw’
SUMMARY: processing the following file failed:
‘bcSeq.Rnw’
Error: Vignette re-building failed.
Execution halted