Lang Ho Lee
| Snapshot Date: 2026-01-14 13:40 -0500 (Wed, 14 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/XINA |
| git_branch: devel |
| git_last_commit: 6e730aa |
| git_last_commit_date: 2025-10-29 10:47:20 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-15 11:35 -0500 (Thu, 15 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4848 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4628 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2332/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| XINA 1.29.0 (landing page) Lang Ho Lee
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the XINA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XINA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: XINA |
| Version: 1.29.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data XINA |
| StartedAt: 2026-01-14 20:55:14 -0500 (Wed, 14 Jan 2026) |
| EndedAt: 2026-01-14 20:55:26 -0500 (Wed, 14 Jan 2026) |
| EllapsedTime: 12.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data XINA
###
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* checking for file ‘XINA/DESCRIPTION’ ... OK
* preparing ‘XINA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘xina_user_code.Rmd’ using rmarkdown
Quitting from xina_user_code.Rmd:118-121 [XINA clustering]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `svd()`:
! infinite or missing values in 'x'
---
Backtrace:
▆
1. └─XINA::xina_clustering(...)
2. ├─mclust::Mclust(superset[data_column], G = 2:nClusters)
3. │ └─base::eval(mc, parent.frame())
4. │ └─base::eval(mc, parent.frame())
5. └─mclust::mclustBIC(data = `<dbl[,7]>`, G = 2:nClusters)
6. ├─mclust::me(...)
7. │ └─base::eval(mc, parent.frame())
8. │ └─base::eval(mc, parent.frame())
9. └─mclust::meVEE(...)
10. └─base::svd(shape.o, nu = 0)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'xina_user_code.Rmd' failed with diagnostics:
infinite or missing values in 'x'
--- failed re-building ‘xina_user_code.Rmd’
SUMMARY: processing the following file failed:
‘xina_user_code.Rmd’
Error: Vignette re-building failed.
Execution halted