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This page was generated on 2025-11-24 11:39 -0500 (Mon, 24 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4829
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4605
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4568
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1712/2327HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2025-11-23 13:40 -0500 (Sun, 23 Nov 2025)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for Rcpi on lconway

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2025-11-23 23:35:12 -0500 (Sun, 23 Nov 2025)
EndedAt: 2025-11-23 23:37:41 -0500 (Sun, 23 Nov 2025)
EllapsedTime: 148.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  7.080   0.733   6.932 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0020.0030.005
AA3DMoRSE0.0010.0020.003
AAACF0.0010.0020.003
AABLOSUM1000.0010.0020.003
AABLOSUM450.0010.0020.002
AABLOSUM500.0010.0020.003
AABLOSUM620.0010.0020.003
AABLOSUM800.0010.0020.003
AABurden0.0000.0020.003
AACPSA0.0010.0020.003
AAConn0.0010.0020.002
AAConst0.0010.0020.002
AADescAll0.0000.0010.002
AAEdgeAdj0.0010.0010.002
AAEigIdx0.0010.0020.003
AAFGC0.0010.0020.003
AAGETAWAY0.0010.0020.004
AAGeom0.0010.0020.003
AAInfo0.0010.0020.003
AAMOE2D0.0010.0020.003
AAMOE3D0.0010.0020.003
AAMetaInfo0.0010.0020.003
AAMolProp0.0010.0020.003
AAPAM1200.0000.0010.002
AAPAM2500.0010.0010.002
AAPAM300.0010.0020.003
AAPAM400.0000.0020.002
AAPAM700.0010.0020.002
AARDF0.0010.0020.002
AARandic0.0010.0010.003
AATopo0.0010.0020.003
AATopoChg0.0000.0010.002
AAWHIM0.0010.0010.002
AAWalk0.0010.0010.002
AAindex0.0010.0010.002
OptAA3d0.0010.0000.000
acc0.0240.0050.028
calcDrugFPSim000
calcDrugMCSSim0.0040.0040.009
calcParProtGOSim0.0010.0000.000
calcParProtSeqSim0.0060.0040.010
calcTwoProtGOSim0.0000.0000.001
calcTwoProtSeqSim0.0020.0010.003
checkProt0.0020.0010.002
convMolFormat0.0010.0000.002
extractDrugAIO0.0010.0000.001
extractDrugALOGP0.0010.0000.002
extractDrugAminoAcidCount0.0000.0000.001
extractDrugApol0.0010.0010.001
extractDrugAromaticAtomsCount0.0010.0010.001
extractDrugAromaticBondsCount0.0010.0010.001
extractDrugAtomCount0.0010.0000.001
extractDrugAutocorrelationCharge0.0010.0000.001
extractDrugAutocorrelationMass0.0010.0010.001
extractDrugAutocorrelationPolarizability0.0000.0010.002
extractDrugBCUT0.0010.0010.001
extractDrugBPol0.0010.0010.001
extractDrugBondCount0.0010.0000.001
extractDrugCPSA0.0010.0000.001
extractDrugCarbonTypes0.0010.0010.002
extractDrugChiChain0.0010.0010.001
extractDrugChiCluster0.0010.0010.001
extractDrugChiPath0.0000.0000.001
extractDrugChiPathCluster0.0010.0000.002
extractDrugDescOB0.0070.0040.012
extractDrugECI0.0010.0000.001
extractDrugEstate0.0010.0010.002
extractDrugEstateComplete0.0000.0010.001
extractDrugExtended0.0010.0010.001
extractDrugExtendedComplete0.0010.0000.001
extractDrugFMF0.0010.0010.002
extractDrugFragmentComplexity0.0000.0000.001
extractDrugGraph0.0010.0000.001
extractDrugGraphComplete0.0010.0000.001
extractDrugGravitationalIndex0.0010.0010.002
extractDrugHBondAcceptorCount0.0010.0010.001
extractDrugHBondDonorCount0.0000.0010.001
extractDrugHybridization000
extractDrugHybridizationComplete0.0010.0000.001
extractDrugHybridizationRatio0.0000.0010.001
extractDrugIPMolecularLearning0.0010.0010.002
extractDrugKR0.0010.0010.001
extractDrugKRComplete0.0000.0010.001
extractDrugKappaShapeIndices0.0000.0010.001
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain0.0010.0000.001
extractDrugLargestPiSystem0.0010.0010.001
extractDrugLengthOverBreadth0.0010.0010.000
extractDrugLongestAliphaticChain0.0010.0000.001
extractDrugMACCS0.0010.0000.001
extractDrugMACCSComplete0.0010.0010.001
extractDrugMDE0.0010.0010.001
extractDrugMannholdLogP0.0010.0000.001
extractDrugMomentOfInertia0.0010.0000.000
extractDrugOBFP20.0140.0080.021
extractDrugOBFP30.0070.0040.010
extractDrugOBFP40.0980.0090.110
extractDrugOBMACCS0.0080.0050.014
extractDrugPetitjeanNumber0.0010.0010.002
extractDrugPetitjeanShapeIndex0.0010.0010.002
extractDrugPubChem0.0010.0000.002
extractDrugPubChemComplete0.0010.0010.002
extractDrugRotatableBondsCount0.0010.0010.002
extractDrugRuleOfFive0.0010.0010.001
extractDrugShortestPath0.0010.0010.002
extractDrugShortestPathComplete0.0010.0000.002
extractDrugStandard0.0010.0010.002
extractDrugStandardComplete0.0000.0010.002
extractDrugTPSA0.0010.0010.002
extractDrugVABC0.0010.0000.001
extractDrugVAdjMa0.0010.0000.001
extractDrugWHIM0.0010.0010.002
extractDrugWeight0.0010.0010.001
extractDrugWeightedPath0.0010.0000.002
extractDrugWienerNumbers0.0010.0000.001
extractDrugXLogP0.0010.0000.001
extractDrugZagrebIndex0.0010.0000.002
extractPCMBLOSUM0.0120.0030.015
extractPCMDescScales0.0110.0020.013
extractPCMFAScales0.0260.0070.035
extractPCMMDSScales0.0100.0030.013
extractPCMPropScales0.0110.0020.013
extractPCMScales0.0170.0050.023
extractProtAAC0.0020.0010.003
extractProtAPAAC0.7800.0220.809
extractProtCTDC0.0020.0010.004
extractProtCTDD0.0050.0020.006
extractProtCTDT0.0050.0010.007
extractProtCTriad0.1150.0120.127
extractProtDC0.0030.0060.009
extractProtGeary0.1370.0120.149
extractProtMoran0.1190.0090.130
extractProtMoreauBroto0.1170.0120.130
extractProtPAAC0.4080.0090.420
extractProtPSSM0.0010.0000.002
extractProtPSSMAcc0.0010.0000.001
extractProtPSSMFeature0.0010.0010.002
extractProtQSO0.6880.0150.709
extractProtSOCN0.6940.0130.713
extractProtTC0.0340.0820.116
getCPI0.0030.0010.003
getDrug0.0000.0000.001
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0030.0010.004
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB0.0010.0000.000
getSeqFromUniProt0.0000.0010.000
getSmiFromChEMBL000
getSmiFromDrugBank0.0000.0000.001
getSmiFromKEGG0.0000.0010.000
getSmiFromPubChem0.0010.0000.000
readFASTA0.0010.0010.001
readMolFromSDF0.0020.0020.003
readMolFromSmi0.0010.0010.002
readPDB0.7500.0110.770
searchDrug0.0020.0010.003
segProt0.0020.0020.004