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This page was generated on 2026-03-04 11:35 -0500 (Wed, 04 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4882
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4574
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1735/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-03 13:40 -0500 (Tue, 03 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-03 21:41:04 -0500 (Tue, 03 Mar 2026)
EndedAt: 2026-03-03 21:42:00 -0500 (Tue, 03 Mar 2026)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.850   0.269   2.553 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0000.0010.002
AA3DMoRSE0.0000.0010.001
AAACF0.0000.0010.001
AABLOSUM1000.0000.0000.001
AABLOSUM450.0000.0010.001
AABLOSUM500.0000.0010.001
AABLOSUM62000
AABLOSUM800.0010.0010.000
AABurden0.0000.0000.001
AACPSA0.0000.0000.001
AAConn000
AAConst000
AADescAll0.0000.0000.001
AAEdgeAdj0.0000.0000.001
AAEigIdx0.0010.0010.000
AAFGC0.0000.0000.001
AAGETAWAY0.0000.0010.001
AAGeom0.0000.0000.001
AAInfo0.0000.0000.001
AAMOE2D0.0000.0010.001
AAMOE3D000
AAMetaInfo0.0010.0010.000
AAMolProp0.0000.0000.001
AAPAM1200.0000.0010.001
AAPAM2500.0000.0000.001
AAPAM300.0010.0010.000
AAPAM400.0000.0010.001
AAPAM700.0000.0000.001
AARDF0.0000.0010.001
AARandic0.0000.0000.001
AATopo0.0010.0010.001
AATopoChg0.0000.0000.001
AAWHIM0.0000.0010.000
AAWalk0.0010.0000.000
AAindex0.0000.0010.001
OptAA3d000
acc0.0030.0030.006
calcDrugFPSim0.0000.0000.001
calcDrugMCSSim0.0090.0020.010
calcParProtGOSim000
calcParProtSeqSim0.0030.0010.004
calcTwoProtGOSim0.0000.0010.001
calcTwoProtSeqSim0.0000.0000.001
checkProt0.0000.0000.001
convMolFormat000
extractDrugAIO0.0010.0000.000
extractDrugALOGP0.0000.0000.001
extractDrugAminoAcidCount000
extractDrugApol0.0010.0000.000
extractDrugAromaticAtomsCount0.0000.0000.001
extractDrugAromaticBondsCount0.0000.0000.001
extractDrugAtomCount000
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass0.0000.0010.000
extractDrugAutocorrelationPolarizability000
extractDrugBCUT000
extractDrugBPol0.0010.0000.001
extractDrugBondCount000
extractDrugCPSA000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain0.0000.0010.000
extractDrugChiCluster0.0010.0000.000
extractDrugChiPath000
extractDrugChiPathCluster0.0000.0010.001
extractDrugDescOB0.0020.0010.003
extractDrugECI0.0010.0000.000
extractDrugEstate000
extractDrugEstateComplete0.0010.0010.001
extractDrugExtended0.0000.0000.001
extractDrugExtendedComplete000
extractDrugFMF0.0010.0000.000
extractDrugFragmentComplexity0.0000.0000.001
extractDrugGraph0.0010.0000.001
extractDrugGraphComplete0.0000.0010.000
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount0.0000.0010.000
extractDrugHBondDonorCount0.0000.0000.001
extractDrugHybridization0.0010.0000.001
extractDrugHybridizationComplete000
extractDrugHybridizationRatio000
extractDrugIPMolecularLearning0.0000.0000.001
extractDrugKR000
extractDrugKRComplete0.0000.0010.000
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain0.0010.0000.000
extractDrugLargestPiSystem0.0000.0010.000
extractDrugLengthOverBreadth0.0000.0000.001
extractDrugLongestAliphaticChain0.0010.0000.000
extractDrugMACCS000
extractDrugMACCSComplete0.0000.0000.001
extractDrugMDE0.0000.0000.001
extractDrugMannholdLogP0.0000.0010.000
extractDrugMomentOfInertia0.0010.0000.000
extractDrugOBFP20.0040.0010.007
extractDrugOBFP30.0010.0010.002
extractDrugOBFP40.0510.0020.053
extractDrugOBMACCS0.0020.0010.003
extractDrugPetitjeanNumber000
extractDrugPetitjeanShapeIndex0.0000.0010.001
extractDrugPubChem000
extractDrugPubChemComplete0.0010.0000.000
extractDrugRotatableBondsCount0.0000.0000.001
extractDrugRuleOfFive0.0000.0010.000
extractDrugShortestPath0.0010.0000.000
extractDrugShortestPathComplete0.0000.0000.001
extractDrugStandard000
extractDrugStandardComplete000
extractDrugTPSA0.0000.0000.001
extractDrugVABC0.0010.0000.000
extractDrugVAdjMa0.0000.0010.000
extractDrugWHIM0.0000.0000.001
extractDrugWeight0.0010.0000.000
extractDrugWeightedPath000
extractDrugWienerNumbers0.0000.0000.001
extractDrugXLogP0.0010.0000.000
extractDrugZagrebIndex000
extractPCMBLOSUM0.0040.0010.006
extractPCMDescScales0.0040.0010.005
extractPCMFAScales0.0120.0040.017
extractPCMMDSScales0.0040.0000.005
extractPCMPropScales0.0040.0000.004
extractPCMScales0.0050.0020.006
extractProtAAC0.0010.0000.001
extractProtAPAAC0.2710.0090.295
extractProtCTDC0.0010.0010.002
extractProtCTDD0.0010.0020.003
extractProtCTDT0.0020.0000.003
extractProtCTriad0.0320.0040.038
extractProtDC0.0010.0010.003
extractProtGeary0.0390.0030.042
extractProtMoran0.0380.0040.047
extractProtMoreauBroto0.0370.0030.041
extractProtPAAC0.1240.0030.135
extractProtPSSM0.0000.0000.001
extractProtPSSMAcc000
extractProtPSSMFeature0.0000.0010.000
extractProtQSO0.2260.0060.250
extractProtSOCN0.2130.0040.221
extractProtTC0.0110.0330.046
getCPI0.0010.0010.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt0.0010.0000.000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.002
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank0.0000.0010.000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0010.0000.000
readMolFromSDF0.0010.0010.001
readMolFromSmi000
readPDB0.2660.0030.282
searchDrug0.0010.0000.001
segProt0.0000.0010.001