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This page was generated on 2026-03-03 11:35 -0500 (Tue, 03 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4877
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1735/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-02 13:40 -0500 (Mon, 02 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-02 21:43:18 -0500 (Mon, 02 Mar 2026)
EndedAt: 2026-03-02 21:44:14 -0500 (Mon, 02 Mar 2026)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.916   0.276   2.627 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0000.0010.001
AA3DMoRSE000
AAACF0.0000.0000.001
AABLOSUM1000.0010.0000.001
AABLOSUM45000
AABLOSUM50000
AABLOSUM620.0000.0010.001
AABLOSUM80000
AABurden0.0000.0010.000
AACPSA0.0000.0000.002
AAConn0.0010.0000.000
AAConst0.0000.0010.001
AADescAll000
AAEdgeAdj000
AAEigIdx0.0000.0010.001
AAFGC000
AAGETAWAY000
AAGeom0.0000.0000.001
AAInfo000
AAMOE2D0.0000.0010.000
AAMOE3D0.0000.0000.001
AAMetaInfo0.0010.0000.000
AAMolProp0.0000.0010.001
AAPAM120000
AAPAM2500.0000.0000.001
AAPAM300.0010.0000.000
AAPAM400.0000.0000.001
AAPAM700.0000.0010.001
AARDF0.0000.0000.001
AARandic0.0000.0000.001
AATopo0.0000.0000.001
AATopoChg0.0000.0010.000
AAWHIM0.0000.0000.001
AAWalk0.0000.0000.001
AAindex000
OptAA3d000
acc0.0020.0040.006
calcDrugFPSim000
calcDrugMCSSim0.0080.0010.013
calcParProtGOSim0.0000.0000.001
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt0.0000.0010.001
convMolFormat0.0010.0000.001
extractDrugAIO000
extractDrugALOGP0.0000.0000.001
extractDrugAminoAcidCount0.0010.0010.000
extractDrugApol0.0000.0000.001
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount0.0010.0000.001
extractDrugAtomCount0.0000.0010.001
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass0.0010.0000.001
extractDrugAutocorrelationPolarizability000
extractDrugBCUT0.0000.0010.001
extractDrugBPol000
extractDrugBondCount0.0000.0000.001
extractDrugCPSA000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain0.0010.0000.000
extractDrugChiCluster000
extractDrugChiPath000
extractDrugChiPathCluster000
extractDrugDescOB0.0010.0000.003
extractDrugECI0.0010.0000.001
extractDrugEstate000
extractDrugEstateComplete000
extractDrugExtended000
extractDrugExtendedComplete000
extractDrugFMF000
extractDrugFragmentComplexity0.0010.0000.000
extractDrugGraph000
extractDrugGraphComplete000
extractDrugGravitationalIndex0.0000.0010.000
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount000
extractDrugHybridization000
extractDrugHybridizationComplete0.0010.0000.000
extractDrugHybridizationRatio0.0000.0010.000
extractDrugIPMolecularLearning000
extractDrugKR0.0010.0000.000
extractDrugKRComplete000
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts0.0000.0010.000
extractDrugLargestChain000
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth0.0010.0000.000
extractDrugLongestAliphaticChain0.0000.0010.000
extractDrugMACCS0.0000.0000.001
extractDrugMACCSComplete000
extractDrugMDE0.0000.0000.001
extractDrugMannholdLogP000
extractDrugMomentOfInertia0.0000.0010.001
extractDrugOBFP20.0050.0010.006
extractDrugOBFP30.0020.0010.002
extractDrugOBFP40.0400.0020.050
extractDrugOBMACCS0.0020.0010.003
extractDrugPetitjeanNumber0.0000.0000.001
extractDrugPetitjeanShapeIndex000
extractDrugPubChem0.0000.0000.001
extractDrugPubChemComplete0.0000.0010.000
extractDrugRotatableBondsCount0.0010.0000.000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath000
extractDrugShortestPathComplete0.0000.0010.001
extractDrugStandard000
extractDrugStandardComplete000
extractDrugTPSA0.0010.0000.001
extractDrugVABC0.0000.0010.000
extractDrugVAdjMa0.0000.0000.001
extractDrugWHIM000
extractDrugWeight0.0000.0000.001
extractDrugWeightedPath000
extractDrugWienerNumbers0.0000.0000.001
extractDrugXLogP000
extractDrugZagrebIndex000
extractPCMBLOSUM0.0040.0010.004
extractPCMDescScales0.0030.0000.004
extractPCMFAScales0.0080.0010.012
extractPCMMDSScales0.0030.0010.005
extractPCMPropScales0.0040.0000.004
extractPCMScales0.0050.0010.006
extractProtAAC0.0000.0010.001
extractProtAPAAC0.2580.0070.281
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0010.0000.002
extractProtCTDT0.0020.0010.002
extractProtCTriad0.0280.0040.032
extractProtDC0.0010.0010.003
extractProtGeary0.0380.0060.044
extractProtMoran0.0370.0050.041
extractProtMoreauBroto0.0350.0030.049
extractProtPAAC0.1210.0020.124
extractProtPSSM0.0000.0010.001
extractProtPSSMAcc000
extractProtPSSMFeature000
extractProtQSO0.2160.0050.242
extractProtSOCN0.2120.0060.233
extractProtTC0.0100.0330.046
getCPI0.0010.0010.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank0.0000.0010.000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA000
readMolFromSDF0.0000.0000.001
readMolFromSmi0.0000.0010.001
readPDB0.2730.0020.291
searchDrug0.0010.0000.001
segProt0.0000.0010.001