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This page was generated on 2025-10-20 12:06 -0400 (Mon, 20 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4887
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4677
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4622
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4632
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1725/2353HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.45.0  (landing page)
Nan Xiao
Snapshot Date: 2025-10-19 13:45 -0400 (Sun, 19 Oct 2025)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: dba81ab
git_last_commit_date: 2025-04-15 10:29:42 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.45.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.45.0.tar.gz
StartedAt: 2025-10-19 21:30:29 -0400 (Sun, 19 Oct 2025)
EndedAt: 2025-10-19 21:31:17 -0400 (Sun, 19 Oct 2025)
EllapsedTime: 47.7 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/Rcpi.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.45.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.45.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.499   0.272   2.219 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.002
AA3DMoRSE0.0000.0000.001
AAACF0.0010.0010.000
AABLOSUM1000.0000.0010.000
AABLOSUM45000
AABLOSUM500.0000.0010.001
AABLOSUM620.0000.0000.001
AABLOSUM800.0000.0000.001
AABurden0.0010.0000.000
AACPSA0.0000.0000.001
AAConn0.0000.0000.001
AAConst0.0000.0000.001
AADescAll0.0010.0000.000
AAEdgeAdj000
AAEigIdx0.0000.0000.001
AAFGC0.0000.0010.001
AAGETAWAY0.0000.0000.001
AAGeom0.0000.0010.000
AAInfo000
AAMOE2D0.0010.0010.001
AAMOE3D0.0000.0000.001
AAMetaInfo0.0000.0010.001
AAMolProp000
AAPAM1200.0010.0010.000
AAPAM2500.0000.0000.001
AAPAM300.0000.0010.001
AAPAM40000
AAPAM700.0010.0010.000
AARDF0.0000.0000.001
AARandic0.0000.0010.001
AATopo0.0000.0000.001
AATopoChg0.0000.0010.000
AAWHIM000
AAWalk0.0000.0010.001
AAindex0.0000.0000.001
OptAA3d0.0000.0010.000
acc0.0020.0020.005
calcDrugFPSim0.0010.0000.000
calcDrugMCSSim0.0010.0010.003
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt0.0000.0000.001
convMolFormat000
extractDrugAIO0.0000.0000.001
extractDrugALOGP000
extractDrugAminoAcidCount0.0010.0010.000
extractDrugApol000
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount0.0010.0000.001
extractDrugAtomCount000
extractDrugAutocorrelationCharge0.0000.0000.001
extractDrugAutocorrelationMass000
extractDrugAutocorrelationPolarizability000
extractDrugBCUT000
extractDrugBPol000
extractDrugBondCount0.0010.0000.000
extractDrugCPSA000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain000
extractDrugChiCluster000
extractDrugChiPath0.0000.0000.001
extractDrugChiPathCluster000
extractDrugDescOB0.0050.0010.006
extractDrugECI0.0000.0010.001
extractDrugEstate000
extractDrugEstateComplete0.0010.0000.000
extractDrugExtended0.0000.0000.001
extractDrugExtendedComplete0.0000.0010.000
extractDrugFMF0.0000.0000.001
extractDrugFragmentComplexity000
extractDrugGraph0.0000.0000.001
extractDrugGraphComplete0.0000.0010.000
extractDrugGravitationalIndex0.0010.0000.001
extractDrugHBondAcceptorCount0.0000.0000.001
extractDrugHBondDonorCount0.0010.0000.000
extractDrugHybridization000
extractDrugHybridizationComplete000
extractDrugHybridizationRatio000
extractDrugIPMolecularLearning0.0000.0000.001
extractDrugKR000
extractDrugKRComplete0.0000.0000.001
extractDrugKappaShapeIndices0.0010.0000.000
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain000
extractDrugLargestPiSystem0.0000.0000.001
extractDrugLengthOverBreadth000
extractDrugLongestAliphaticChain0.0000.0000.001
extractDrugMACCS000
extractDrugMACCSComplete0.0010.0000.001
extractDrugMDE000
extractDrugMannholdLogP0.0000.0000.001
extractDrugMomentOfInertia000
extractDrugOBFP20.0010.0020.003
extractDrugOBFP30.0040.0010.005
extractDrugOBFP40.0020.0020.003
extractDrugOBMACCS0.0400.0010.042
extractDrugPetitjeanNumber0.0000.0000.001
extractDrugPetitjeanShapeIndex0.0010.0000.000
extractDrugPubChem000
extractDrugPubChemComplete0.0000.0010.000
extractDrugRotatableBondsCount0.0010.0000.000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath000
extractDrugShortestPathComplete0.0010.0000.001
extractDrugStandard000
extractDrugStandardComplete000
extractDrugTPSA0.0000.0010.001
extractDrugVABC000
extractDrugVAdjMa000
extractDrugWHIM000
extractDrugWeight0.0010.0000.000
extractDrugWeightedPath000
extractDrugWienerNumbers000
extractDrugXLogP0.0000.0010.001
extractDrugZagrebIndex0.0010.0000.000
extractPCMBLOSUM0.0030.0010.004
extractPCMDescScales0.0040.0000.004
extractPCMFAScales0.0050.0010.006
extractPCMMDSScales0.0030.0010.003
extractPCMPropScales0.0070.0010.008
extractPCMScales0.0050.0010.006
extractProtAAC0.0000.0000.001
extractProtAPAAC0.2460.0080.255
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0020.0010.002
extractProtCTDT0.0010.0000.002
extractProtCTriad0.0280.0040.031
extractProtDC0.0010.0010.003
extractProtGeary0.0360.0050.041
extractProtMoran0.0350.0030.039
extractProtMoreauBroto0.0320.0030.035
extractProtPAAC0.1150.0020.120
extractProtPSSM0.0010.0010.000
extractProtPSSMAcc000
extractProtPSSMFeature0.0010.0000.001
extractProtQSO0.2090.0060.230
extractProtSOCN0.2110.0060.226
extractProtTC0.0090.0270.037
getCPI0.0000.0000.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0000.0000.002
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA000
readMolFromSDF0.0010.0000.000
readMolFromSmi000
readPDB0.2440.0020.247
searchDrug0.0000.0000.001
segProt0.0010.0000.002