Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:45 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1744/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RImmPort 1.35.0 (landing page) Zicheng Hu
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the RImmPort package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RImmPort.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RImmPort |
Version: 1.35.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RImmPort_1.35.0.tar.gz |
StartedAt: 2024-12-23 21:02:01 -0500 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 21:02:21 -0500 (Mon, 23 Dec 2024) |
EllapsedTime: 20.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RImmPort.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RImmPort_1.35.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/RImmPort.Rcheck’ * using R Under development (unstable) (2024-11-20 r87352) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RImmPort/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RImmPort’ version ‘1.35.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RImmPort’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE buildNewSqliteDb: no visible global function definition for ‘dbListTables’ Undefined global functions or variables: dbListTables * checking Rd files ... NOTE checkRd: (-1) SUPPDV.Rd:22-32: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPFA.Rd:23-28: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPLB.Rd:22-29: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPMH.Rd:23-30: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPPE.Rd:23-28: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPPF.Rd:22-38: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPVS.Rd:23-28: Lost braces 23 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZA.Rd:22-39: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZB.Rd:22-38: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZC.Rd:22-37: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) SUPPZD.Rd:22-37: Lost braces 22 | The following table enumerates the values in QNAM and QLABEL variables { | ^ checkRd: (-1) TS.Rd:20-41: Lost braces 20 | The following table enumerates the values in TSPARMCD and TSPARM variables { | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.21-bioc/meat/RImmPort.Rcheck/00check.log’ for details.
RImmPort.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RImmPort ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘RImmPort’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RImmPort)
RImmPort.Rcheck/RImmPort-Ex.timings
name | user | system | elapsed | |
Events-class | 0.173 | 0.032 | 0.298 | |
Findings-class | 0.076 | 0.013 | 0.088 | |
Interventions-class | 0.067 | 0.009 | 0.076 | |
SpecialPurpose-class | 0.067 | 0.009 | 0.076 | |
Study-class | 0.070 | 0.009 | 0.079 | |
TrialDesign-class | 0.071 | 0.009 | 0.081 | |
buildNewSqliteDb | 0.001 | 0.000 | 0.000 | |
getAssayDataOfStudies | 0.027 | 0.005 | 0.042 | |
getDomainCode | 0 | 0 | 0 | |
getDomainDataOfStudies | 0.038 | 0.003 | 0.041 | |
getListOfAssayTypes | 0 | 0 | 0 | |
getListOfDomains | 0 | 0 | 0 | |
getListOfStudies | 0.014 | 0.003 | 0.017 | |
getStudiesWithSpecificAssayData | 0.014 | 0.004 | 0.017 | |
getStudiesWithSpecificDomainData | 0.013 | 0.003 | 0.016 | |
getStudy | 0.065 | 0.009 | 0.074 | |
loadSerializedStudyData | 0.001 | 0.001 | 0.003 | |
mergeDomainAndSupplemental | 0.047 | 0.006 | 0.053 | |
serialzeStudyData | 0.113 | 0.029 | 0.143 | |
setImmPortDataSource | 0.014 | 0.003 | 0.017 | |