| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-23 11:40 -0500 (Thu, 23 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4435 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4374 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3605 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3835 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1454/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.15.0 (landing page) Denes Turei
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | TIMEOUT | skipped | ||||||||||
|
To the developers/maintainers of the OmnipathR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OmnipathR |
| Version: 3.15.0 |
| Command: rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=OmnipathR.buildbin-libdir OmnipathR_3.15.0.tar.gz |
| StartedAt: 2025-01-23 08:16:00 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 08:18:18 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 138.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: OmnipathR_3.15.0.zip |
| PackageFileSize: 3.233 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=OmnipathR.buildbin-libdir OmnipathR_3.15.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'OmnipathR' ... ** this is package 'OmnipathR' version '3.15.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2025-01-23 08:18:13] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 08:18:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:13] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Contains 1 files. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 08:18:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:13] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-23 08:18:13] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-23 08:18:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:13] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-23 08:18:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:13] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-23 08:18:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:13] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-23 08:18:13] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:13] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2025-01-23 08:18:16] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 08:18:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:16] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Contains 1 files. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2025-01-23 08:18:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:16] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-23 08:18:16] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-23 08:18:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:16] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-23 08:18:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:16] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-23 08:18:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:16] [TRACE] [OmnipathR] Reading JSON from `E:/biocbuild/bbs-3.21-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-23 08:18:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-23 08:18:16] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'OmnipathR' as OmnipathR_3.15.0.zip * DONE (OmnipathR)