Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFGHIJK[L]MNOPQRSTUVWXYZ

This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1088/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LEA 3.19.1  (landing page)
Olivier Francois
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/LEA
git_branch: devel
git_last_commit: a37ac6c
git_last_commit_date: 2024-11-08 12:52:47 -0500 (Fri, 08 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for LEA on kunpeng2

To the developers/maintainers of the LEA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LEA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: LEA
Version: 3.19.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data LEA
StartedAt: 2024-12-24 00:02:01 -0000 (Tue, 24 Dec 2024)
EndedAt: 2024-12-24 00:02:04 -0000 (Tue, 24 Dec 2024)
EllapsedTime: 3.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data LEA
###
##############################################################################
##############################################################################


* checking for file ‘LEA/DESCRIPTION’ ... OK
* preparing ‘LEA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘LEA’ ...
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_LFMM.c -o R_LFMM.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_crossEntropy.c -o R_crossEntropy.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_createDataSet.c -o R_createDataSet.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_sNMF.c -o R_sNMF.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_ancestrymap2geno.c -o R_ancestrymap2geno.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_ancestrymap2lfmm.c -o R_ancestrymap2lfmm.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_geno2lfmm.c -o R_geno2lfmm.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_lfmm2geno.c -o R_lfmm2geno.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_pca.c -o R_pca.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_ped2geno.c -o R_ped2geno.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_ped2lfmm.c -o R_ped2lfmm.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_vcf2geno.c -o R_vcf2geno.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_tracyWidom.c -o R_tracyWidom.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c R_init_LEA.c -o R_init_LEA.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I.  -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c bituint/bituint.c -o bituint/bituint.o
bituint/bituint.c: In function ‘init_mat_bituint’:
bituint/bituint.c:30:28: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
   30 |         *dat = (bituint *) Calloc(N * (*Mp) * sizeof(bituint), bituint);
      |                            ^~~~~~
      |                            calloc
bituint/bituint.c:30:64: error: expected expression before ‘bituint’
   30 |         *dat = (bituint *) Calloc(N * (*Mp) * sizeof(bituint), bituint);
      |                                                                ^~~~~~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:195: bituint/bituint.o] Error 1
ERROR: compilation failed for package ‘LEA’
* removing ‘/home/biocbuild/tmp/Rtmpd6dhRH/Rinst32357c60f0ea0d/LEA’
      -----------------------------------
ERROR: package installation failed