Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2024-12-24 11:41 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 976/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HuBMAPR 1.1.4  (landing page)
Christine Hou
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/HuBMAPR
git_branch: devel
git_last_commit: 33fd90f
git_last_commit_date: 2024-11-03 10:51:27 -0500 (Sun, 03 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for HuBMAPR on palomino7

To the developers/maintainers of the HuBMAPR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HuBMAPR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HuBMAPR
Version: 1.1.4
Command: chmod a+r HuBMAPR -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HuBMAPR
StartedAt: 2024-12-23 19:01:03 -0500 (Mon, 23 Dec 2024)
EndedAt: 2024-12-23 19:01:22 -0500 (Mon, 23 Dec 2024)
EllapsedTime: 19.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r HuBMAPR -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HuBMAPR
###
##############################################################################
##############################################################################


* checking for file 'HuBMAPR/DESCRIPTION' ... OK
* preparing 'HuBMAPR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'hubmapr_vignettes.Rmd' using rmarkdown

Quitting from lines 199-229 [derived using left_join] (hubmapr_vignettes.Rmd)
Error: processing vignette 'hubmapr_vignettes.Rmd' failed with diagnostics:
ℹ In argument: `Body mass index = as.numeric(.data$`Body mass index`)`.
Caused by error in `` .data$`Body mass index` ``:
! Column `Body mass index` not found in `.data`.
--- failed re-building 'hubmapr_vignettes.Rmd'

SUMMARY: processing the following file failed:
  'hubmapr_vignettes.Rmd'

Error: Vignette re-building failed.
Execution halted