| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-11-26 11:44 -0500 (Tue, 26 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4350 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4108 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 975/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HuBMAPR 1.1.4 (landing page) Christine Hou
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the HuBMAPR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HuBMAPR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HuBMAPR |
| Version: 1.1.4 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HuBMAPR |
| StartedAt: 2024-11-25 16:40:49 -0500 (Mon, 25 Nov 2024) |
| EndedAt: 2024-11-25 16:40:56 -0500 (Mon, 25 Nov 2024) |
| EllapsedTime: 7.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HuBMAPR ### ############################################################################## ############################################################################## * checking for file ‘HuBMAPR/DESCRIPTION’ ... OK * preparing ‘HuBMAPR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘hubmapr_vignettes.Rmd’ using rmarkdown 2024-11-25 16:40:55.395 R[34342:16739570] XType: Using static font registry. Quitting from lines 199-229 [derived using left_join] (hubmapr_vignettes.Rmd) Error: processing vignette 'hubmapr_vignettes.Rmd' failed with diagnostics: ℹ In argument: `Body mass index = as.numeric(.data$`Body mass index`)`. Caused by error in `` .data$`Body mass index` ``: ! Column `Body mass index` not found in `.data`. --- failed re-building ‘hubmapr_vignettes.Rmd’ SUMMARY: processing the following file failed: ‘hubmapr_vignettes.Rmd’ Error: Vignette re-building failed. Execution halted