Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-24 11:45 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 947/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.25.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.25.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.25.0.tar.gz |
StartedAt: 2024-12-23 19:41:51 -0500 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 19:42:47 -0500 (Mon, 23 Dec 2024) |
EllapsedTime: 55.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.25.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/HiCBricks.Rcheck’ * using R Under development (unstable) (2024-11-20 r87352) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.25.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 0.332 | 0.041 | 0.380 | |
BrickContainer_change_output_directory | 0.248 | 0.028 | 0.360 | |
BrickContainer_get_path_to_file | 0.204 | 0.030 | 0.238 | |
BrickContainer_list_chromosomes | 0.205 | 0.031 | 0.236 | |
BrickContainer_list_experiment_name | 0.203 | 0.029 | 0.238 | |
BrickContainer_list_files | 0.207 | 0.031 | 0.239 | |
BrickContainer_list_output_directory | 0.204 | 0.031 | 0.236 | |
BrickContainer_list_resolutions | 0.205 | 0.031 | 0.237 | |
BrickContainer_unlink_resolution | 0.441 | 0.058 | 0.498 | |
Brick_add_ranges | 0.546 | 0.047 | 0.673 | |
Brick_call_compartments | 0.397 | 0.055 | 0.499 | |
Brick_export_to_sparse | 0.673 | 0.073 | 0.750 | |
Brick_fetch_range_index | 0.247 | 0.034 | 0.282 | |
Brick_fetch_row_vector | 0.414 | 0.060 | 0.483 | |
Brick_get_bintable | 0.215 | 0.028 | 0.245 | |
Brick_get_chrominfo | 0.202 | 0.033 | 0.237 | |
Brick_get_entire_matrix | 0.337 | 0.058 | 0.395 | |
Brick_get_matrix | 0.485 | 0.054 | 0.643 | |
Brick_get_matrix_mcols | 0.318 | 0.052 | 0.371 | |
Brick_get_matrix_within_coords | 0.450 | 0.065 | 0.517 | |
Brick_get_ranges | 0.212 | 0.034 | 0.255 | |
Brick_get_values_by_distance | 0.368 | 0.081 | 0.450 | |
Brick_get_vector_values | 0.336 | 0.086 | 0.424 | |
Brick_list_matrices | 0.206 | 0.033 | 0.269 | |
Brick_list_matrix_mcols | 0.199 | 0.027 | 0.294 | |
Brick_list_mcool_normalisations | 0.000 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.204 | 0.030 | 0.235 | |
Brick_list_ranges_mcols | 0.202 | 0.028 | 0.230 | |
Brick_load_cis_matrix_till_distance | 0.285 | 0.050 | 0.338 | |
Brick_load_data_from_mcool | 0 | 0 | 0 | |
Brick_load_data_from_sparse | 0.000 | 0.000 | 0.001 | |
Brick_load_matrix | 0.321 | 0.058 | 0.380 | |
Brick_local_score_differentiator | 0.501 | 0.082 | 0.587 | |
Brick_make_ranges | 0.002 | 0.000 | 0.002 | |
Brick_matrix_dimensions | 0.316 | 0.231 | 0.549 | |
Brick_matrix_exists | 0.318 | 0.056 | 0.374 | |
Brick_matrix_filename | 0.311 | 0.056 | 0.474 | |
Brick_matrix_isdone | 0.325 | 0.055 | 0.392 | |
Brick_matrix_issparse | 0.322 | 0.058 | 0.382 | |
Brick_matrix_maxdist | 0.332 | 0.109 | 0.459 | |
Brick_matrix_minmax | 0.327 | 0.076 | 0.406 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 0.203 | 0.029 | 0.239 | |
Brick_return_region_position | 0.231 | 0.033 | 0.264 | |
Brick_vizart_plot_heatmap | 0.623 | 0.100 | 0.829 | |
Create_many_Bricks | 0.202 | 0.029 | 0.231 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 0.224 | 0.032 | 0.256 | |