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This page was generated on 2024-12-24 11:41 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 945/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HIBAG 1.43.1  (landing page)
Xiuwen Zheng
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/HIBAG
git_branch: devel
git_last_commit: 4d1767d
git_last_commit_date: 2024-11-19 22:12:43 -0500 (Tue, 19 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


BUILD BIN results for HIBAG on palomino7

To the developers/maintainers of the HIBAG package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HIBAG.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HIBAG
Version: 1.43.1
Command: rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=HIBAG.buildbin-libdir HIBAG_1.43.1.tar.gz
StartedAt: 2024-12-24 07:16:49 -0500 (Tue, 24 Dec 2024)
EndedAt: 2024-12-24 07:17:52 -0500 (Tue, 24 Dec 2024)
EllapsedTime: 63.8 seconds
RetCode: 0
Status:   OK  
PackageFile: HIBAG_1.43.1.zip
PackageFileSize: 1.998 MiB

Command output

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###
### Running command:
###
###   rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=HIBAG.buildbin-libdir HIBAG_1.43.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'HIBAG' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
using C++11
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c HIBAG.cpp -o HIBAG.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c LibHLA.cpp -o LibHLA.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c LibHLA_ext_avx.cpp -o LibHLA_ext_avx.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c LibHLA_ext_avx2.cpp -o LibHLA_ext_avx2.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -ffixed-xmm16 -ffixed-xmm17 -ffixed-xmm18 -ffixed-xmm19 -ffixed-xmm20 -ffixed-xmm21 -ffixed-xmm22 -ffixed-xmm23 -ffixed-xmm24 -ffixed-xmm25 -ffixed-xmm26 -ffixed-xmm27 -ffixed-xmm28 -ffixed-xmm29 -ffixed-xmm30 -ffixed-xmm31 LibHLA_ext_avx512bw.cpp -c -o LibHLA_ext_avx512bw.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -ffixed-xmm16 -ffixed-xmm17 -ffixed-xmm18 -ffixed-xmm19 -ffixed-xmm20 -ffixed-xmm21 -ffixed-xmm22 -ffixed-xmm23 -ffixed-xmm24 -ffixed-xmm25 -ffixed-xmm26 -ffixed-xmm27 -ffixed-xmm28 -ffixed-xmm29 -ffixed-xmm30 -ffixed-xmm31 LibHLA_ext_avx512f.cpp -c -o LibHLA_ext_avx512f.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -ffixed-xmm16 -ffixed-xmm17 -ffixed-xmm18 -ffixed-xmm19 -ffixed-xmm20 -ffixed-xmm21 -ffixed-xmm22 -ffixed-xmm23 -ffixed-xmm24 -ffixed-xmm25 -ffixed-xmm26 -ffixed-xmm27 -ffixed-xmm28 -ffixed-xmm29 -ffixed-xmm30 -ffixed-xmm31 LibHLA_ext_avx512vpopcnt.cpp -c -o LibHLA_ext_avx512vpopcnt.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c LibHLA_ext_sse2.cpp -o LibHLA_ext_sse2.o
g++  -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"   -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c LibHLA_ext_sse4_2.cpp -o LibHLA_ext_sse4_2.o
gcc  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c samtools_ext.c -o samtools_ext.o
g++ -shared -s -static-libgcc -o HIBAG.dll tmp.def HIBAG.o LibHLA.o LibHLA_ext_avx.o LibHLA_ext_avx2.o LibHLA_ext_avx512bw.o LibHLA_ext_avx512f.o LibHLA_ext_avx512vpopcnt.o LibHLA_ext_sse2.o LibHLA_ext_sse4_2.o samtools_ext.o -LE:/biocbuild/bbs-3.21-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/HIBAG.buildbin-libdir/00LOCK-HIBAG/00new/HIBAG/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'HIBAG' as HIBAG_1.43.1.zip
* DONE (HIBAG)