Multiple platform build/check report for BioC 3.21 - BUILD results for DEXSeq on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4756
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4475
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4435
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4390
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4383
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DEXSeq on lconway

To the developers/maintainers of the DEXSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEXSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DEXSeq

Version: 1.53.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq

StartedAt: 2025-01-03 16:29:03 -0500 (Fri, 03 Jan 2025)

EndedAt: 2025-01-03 16:30:21 -0500 (Fri, 03 Jan 2025)

EllapsedTime: 77.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq
###
##############################################################################
##############################################################################


* checking for file ‘DEXSeq/DESCRIPTION’ ... OK
* preparing ‘DEXSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEXSeq.Rmd’ using rmarkdown
trying URL 'https://ftp.ensembl.org/pub/release-62/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.62.gtf.gz'
Content type 'application/x-gzip' length 2739429 bytes (2.6 MB)
==================================================
downloaded 2.6 MB


Quitting from lines 150-151 [startVignette] (DEXSeq.Rmd)
Error: processing vignette 'DEXSeq.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘DEXSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘DEXSeq.Rmd’

Error: Vignette re-building failed.
Execution halted