Multiple platform build/check report for BioC 3.21 - BUILD results for BindingSiteFinder on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4609
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4393
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3839
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3835
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4408
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BindingSiteFinder on lconway

To the developers/maintainers of the BindingSiteFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BindingSiteFinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BindingSiteFinder

Version: 2.5.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder

StartedAt: 2025-01-23 15:46:29 -0500 (Thu, 23 Jan 2025)

EndedAt: 2025-01-23 15:49:12 -0500 (Thu, 23 Jan 2025)

EllapsedTime: 162.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder
###
##############################################################################
##############################################################################


* checking for file ‘BindingSiteFinder/DESCRIPTION’ ... OK
* preparing ‘BindingSiteFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rmd’ using rmarkdown
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
2025-01-23 15:48:26.219 R[35648:980014831] XType: com.apple.fonts is not accessible.
2025-01-23 15:48:26.219 R[35648:980014831] XType: XTFontStaticRegistry is enabled.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH

Quitting from lines 880-882 [unnamed-chunk-63] (vignette.Rmd)
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
there is no package called 'DESeq2'
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted