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This page was generated on 2024-12-24 11:41 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 220/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.39.0  (landing page)
Andrea Gobbi
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/BiRewire
git_branch: devel
git_last_commit: 8cf10d9
git_last_commit_date: 2024-10-29 09:48:11 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  


INSTALL results for BiRewire on palomino7

To the developers/maintainers of the BiRewire package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiRewire
Version: 3.39.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL BiRewire
StartedAt: 2024-12-23 15:19:31 -0500 (Mon, 23 Dec 2024)
EndedAt: 2024-12-23 15:19:51 -0500 (Mon, 23 Dec 2024)
EllapsedTime: 20.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL BiRewire
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'BiRewire' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'analysis':
BiRewire.c:149:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  149 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'analysis_ex':
BiRewire.c:221:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  221 |                                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                                  ~^             ~~~~~~~~~~~
      |                                                   |             |
      |                                                   int           time_t {aka long long int}
      |                                                  %lld
BiRewire.c:229:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  229 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_bipartite':
BiRewire.c:280:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  280 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_bipartite_ex':
BiRewire.c:332:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  332 |                                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                                  ~^             ~~~~~~~~~~~
      |                                                   |             |
      |                                                   int           time_t {aka long long int}
      |                                                  %lld
BiRewire.c:339:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  339 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_sparse_bipartite':
BiRewire.c:402:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  402 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_sparse_bipartite_ex':
BiRewire.c:454:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  454 |                                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                                  ~^             ~~~~~~~~~~~
      |                                                   |             |
      |                                                   int           time_t {aka long long int}
      |                                                  %lld
BiRewire.c:461:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  461 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'analysis_undirected':
BiRewire.c:588:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  588 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'analysis_undirected_ex':
BiRewire.c:652:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  652 |                                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                                  ~^             ~~~~~~~~~~~
      |                                                   |             |
      |                                                   int           time_t {aka long long int}
      |                                                  %lld
BiRewire.c:737:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  737 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire':
BiRewire.c:844:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  844 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_ex':
BiRewire.c:893:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  893 |                                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                                  ~^             ~~~~~~~~~~~
      |                                                   |             |
      |                                                   int           time_t {aka long long int}
      |                                                  %lld
BiRewire.c:962:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
  962 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
 1066 |                 if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
      |                             ~^~~
BiRewire.c:1096:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
 1096 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1144:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
 1144 |                                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                                  ~^             ~~~~~~~~~~~
      |                                                   |             |
      |                                                   int           time_t {aka long long int}
      |                                                  %lld
BiRewire.c:1149:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
 1149 |                 if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
      |                             ~^~~
BiRewire.c:1183:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long long int'} [-Wformat=]
 1183 |                 Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                                  ~^             ~~~~~~~~~~~
      |                                   |             |
      |                                   int           time_t {aka long long int}
      |                                  %lld
gcc  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c interface.c -o interface.o
interface.c: In function 'R_rewire_bipartite':
interface.c:105:25: warning: too many arguments for format [-Wformat-extra-args]
  105 |                 warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire_sparse_bipartite':
interface.c:147:25: warning: too many arguments for format [-Wformat-extra-args]
  147 |                 warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire':
interface.c:252:25: warning: too many arguments for format [-Wformat-extra-args]
  252 |                 warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function 'R_rewire_sparse':
interface.c:296:25: warning: too many arguments for format [-Wformat-extra-args]
  296 |                 warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-BiRewire/00new/BiRewire/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)